List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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abyss 2.1.4

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libsigsegv-2.12-7mdbq7aymwdyer55kqxtwkmabrqfrjio
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/berkeley-db-18.1.40-bcpbh3jxr5snfw5botpbzrncua2jgxtk
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/pkgconf-1.7.3-e7n3ibmo3qglloicw627euk3653lj7dy
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libiconv-1.16-rveg745oel7pthzqe7iyusrxozpfhzha
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj
==> Installing sse2neon-master-lnku54yu64rrifzcjke247xdmjx7hrcw
==> No binary for sse2neon-master-lnku54yu64rrifzcjke247xdmjx7hrcw found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Warning: Missing a source id for sse2neon@master
==> No patches needed for sse2neon
==> sse2neon: Executing phase: 'install'
==> sse2neon: Successfully installed sse2neon-master-lnku54yu64rrifzcjke247xdmjx7hrcw
Fetch: 3.68s. Build: 1.09s. Total: 4.77s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/sse2neon-master-lnku54yu64rrifzcjke247xdmjx7hrcw
==> fujitsu-mpi@4.3.1 : has external module in ['lang/tcsds-1.2.30a']
[+] /opt/FJSVxtclanga/tcsds-1.2.30a (external fujitsu-mpi-4.3.1-uzvxr3eqtfulyujbjs4xxt5t3fka76rl)
==> Installing sparsehash-2.0.3-utgmeqpevjynymcricimddk5llldls45
==> No binary for sparsehash-2.0.3-utgmeqpevjynymcricimddk5llldls45 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/05/05e986a5c7327796dad742182b2d10805a8d4f511ad090da0490f146c1ff7a8c.tar.gz
==> No patches needed for sparsehash
==> sparsehash: Executing phase: 'autoreconf'
==> sparsehash: Executing phase: 'configure'
==> sparsehash: Executing phase: 'build'
==> sparsehash: Executing phase: 'install'
==> sparsehash: Successfully installed sparsehash-2.0.3-utgmeqpevjynymcricimddk5llldls45
Fetch: 0.23s. Build: 6m 15.98s. Total: 6m 16.21s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/sparsehash-2.0.3-utgmeqpevjynymcricimddk5llldls45
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/m4-1.4.18-higyfcycqmi77nsmij4ttoph4decqvjg
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/ncurses-6.2-3cvcdzzqxzuywrbb3fgurgwja7neml6e
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/diffutils-3.7-4tdgwdjkarwx76hsznr273ee5knouaav
==> Installing bwa-0.7.17-6kywxfdctoiwya5lontge4m3ytftvdj2
==> No binary for bwa-0.7.17-6kywxfdctoiwya5lontge4m3ytftvdj2 found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/de/de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd.tar.bz2
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/bwa/bwa_for_aarch64.patch
==> bwa: Executing phase: 'install'
==> bwa: Successfully installed bwa-0.7.17-6kywxfdctoiwya5lontge4m3ytftvdj2
Fetch: 0.35s. Build: 11.45s. Total: 11.80s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bwa-0.7.17-6kywxfdctoiwya5lontge4m3ytftvdj2
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libtool-2.4.6-heralap5rbm3tgxvlguunwf4tk7jvcri
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/readline-8.0-x67xwcqnux4xmbj3b7oms47n5fup44e3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/sqlite-3.34.0-u7kilxrpewq53ou4yb45ztf5dvzjcko4
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/boost-1.75.0-qwkw6lye2zjhhezgezznjhfctpqnubz5
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/autoconf-2.69-ou7nluauc5ehv42p3q56tvz4t746r4l7
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/automake-1.16.3-5gcjddw55bul6jjqn7sfepr3qfs4rmow
==> Installing abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r
==> No binary for abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/21/2145a1727556104d6a14db06a9c06f47b96c31cc5ac595ae9c92224349bdbcfc.tar.gz
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/abyss/fix_BloomFilter.hpp.patch
==> abyss: Executing phase: 'autoreconf'
==> abyss: Executing phase: 'configure'
==> abyss: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
392 make[2]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-src/Al
ign'
393 Making all in ABYSS
394 make[2]: Entering directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-src/A
BYSS'
395 /vol0001/g9300001/u93001/all-test/fj/spack/lib/spack/env/fj/case-in
sensitive/FCC -DHAVE_CONFIG_H -I. -I/home/g9300001/u93001/spack-sta
ge/spack-stage-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-s
rc/ABYSS -I.. -I/home/g9300001/u93001/spack-stage/spack-stage-abys
s-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-src -I/home/g9300001
/u93001/spack-stage/spack-stage-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z
2nim3ya6r/spack-src -isystem/vol0001/g9300001/u93001/all-test/fj/sp
ack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/boost-1.75.0-qwkw6lye2zjh
hezgezznjhfctpqnubz5 -isystem/vol0001/g9300001/u93001/all-test/fj/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/boost-1.75.0-qwkw6lye2zj
hhezgezznjhfctpqnubz5/include -isystem/opt/FJSVxtclanga/tcsds-1.2.3
0a/include -I/vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/l
inux-rhel8-a64fx/fj-4.4.0a/sqlite-3.34.0-u7kilxrpewq53ou4yb45ztf5dv
zjcko4/include -isystem/home/g9300001/u93001/spack-stage/spack-st
age-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-src/boost_1_
56_0 -Wall -Wextra -Werror -g -O2 -MT ABYSS-abyss.o -MD -MP -MF .de
ps/ABYSS-abyss.Tpo -c -o ABYSS-abyss.o `test -f 'abyss.cc' || echo
'/home/g9300001/u93001/spack-stage/spack-stage-abyss-2.1.4-cbqznp5t
wlnjb4r5mekie3z2nim3ya6r/spack-src/ABYSS/'`abyss.cc
396 In file included from abyss.cc:7:
397 In file included from ../Assembly/AssemblyAlgorithms.h:4:
>> 398 ../Assembly/BranchGroup.h:215:14: error: no function template match
es function template specialization 'swap'
399 inline void swap(BranchGroup&, BranchGroup&) NOEXCEPT { ass
ert(false); }
400 ^
401 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
move.h:205:5: note: candidate template ignored: could not match 'ty
pe-parameter-0-0 [_Size]' against 'BranchGroup'
402 swap(_Tp (&__a)[_Nm], _Tp (&__b)[_Nm])
403 ^
404 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/
stl_pair.h:495:5: note: candidate template ignored: could not match
'pair<type-parameter-0-0, type-parameter-0-1>' against 'BranchGrou
p'

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-abyss-2.1.4-cbqznp5twlnjb4r5mekie3z2nim3ya6r/spack-build-out.txt


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