List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
ants 2.2.0
| Compiler | Fujitsu Compiler 4.4.0a |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/pkgconf-1.7.3-e7n3ibmo3qglloicw627euk3653lj7dy
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/berkeley-db-18.1.40-bcpbh3jxr5snfw5botpbzrncua2jgxtk
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/ncurses-6.2-3cvcdzzqxzuywrbb3fgurgwja7neml6e
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/readline-8.0-x67xwcqnux4xmbj3b7oms47n5fup44e3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/openssl-1.1.1j-de77zldhh5cmb3lcdens3lo2j5mypejs
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/cmake-3.19.5-jp3cfybxfwjhwjodfiuafqkc3t7wj6h3
==> Installing ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p
==> No binary for ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p found: installing from source
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/62/62f8f9ae141cb45025f4bb59277c053acf658d4a3ba868c9e0f609af72e66b4a.tar.gz
==> No patches needed for ants
==> ants: Executing phase: 'cmake'
==> ants: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'
5 errors found in build log:
2848 make[5]: Entering directory '/vol0001/g9300001/u93001/spack-stage/
spack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-buil
d-ueupzia/ITKv4-build'
2849 [ 52%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5MPtest.c.o
2850 [ 52%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmModule.cxx
.o
2851 [ 52%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmMacro.cxx.
o
2852 [ 52%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib
/CMakeFiles/itkv3p_netlib.dir/datapac/camsun.c.o
2853 [ 52%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5O.c.o
>> 2854 /vol0001/g9300001/u93001/spack-stage/spack-stage-ants-2.2.0-ueupzi
ahghrzhofjg6fiklq3xepib36p/spack-build-ueupzia/ITKv4/Modules/Third
Party/VNL/src/vxl/v3p/netlib/linalg/lsqrBase.cxx:565:14: error: or
dered comparison between pointer and zero ('std::ostream *' (aka '
basic_ostream<char> *') and 'int')
2855 if (nout > 0)
2856 ~~~~ ^ ~
2857 [ 52%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmModules.cx
x.o
2858 [ 52%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmMacros.cxx
.o
2859 [ 52%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmNestedModu
leEntries.cxx.o
2860 1 error generated.
>> 2861 make[5]: *** [Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles
/itkv3p_netlib.dir/build.make:3982: Modules/ThirdParty/VNL/src/vxl
/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/linalg/lsqrBase.cxx.o] Er
ror 1
2862 make[5]: *** Waiting for unfinished jobs....
2863 [ 52%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Oainfo.c.o
2864 [ 52%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Oalloc.c.o
2865 [ 52%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl
/CMakeFiles/itkvnl.dir/Templates/vnl_fortran_copy+vcl_complex+doub
le--.cxx.o
2866 [ 52%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Oattr.c.o
2867 [ 52%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl
/CMakeFiles/itkvnl.dir/Templates/vnl_fortran_copy+vcl_complex+floa
t--.cxx.o
...
2880 [ 53%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl
/CMakeFiles/itkvnl.dir/Templates/vnl_hungarian_algorithm+int-.cxx.
o
2881 [ 53%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Ocache.c.o
2882 [ 54%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source
/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmSeries.cxx
.o
2883 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Ochunk.c.o
2884 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Ocont.c.o
2885 make[5]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia/ITKv4-build'
>> 2886 make[4]: *** [CMakeFiles/Makefile2:5661: Modules/ThirdParty/VNL/sr
c/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/all] Error 2
2887 make[4]: *** Waiting for unfinished jobs....
2888 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Ocopy.c.o
2889 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Odbg.c.o
2890 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Odrvinfo.c.o
2891 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Odtype.c.o
2892 [ 54%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/C
MakeFiles/hdf5-static.dir/H5Oefl.c.o
...
3176 [ 67%] Linking C static library /vol0001/g9300001/u93001/spack-sta
ge/spack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-b
uild-ueupzia/lib/libitkhdf5.a
3177 make[5]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia/ITKv4-build'
3178 [ 67%] Built target hdf5-static
3179 make[4]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia/ITKv4-build'
3180 make[3]: *** [Makefile:171: all] Error 2
3181 make[3]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia/ITKv4-build'
>> 3182 make[2]: *** [CMakeFiles/ITKv4.dir/build.make:134: ITKv4-prefix/sr
c/ITKv4-stamp/ITKv4-build] Error 2
3183 make[2]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia'
>> 3184 make[1]: *** [CMakeFiles/Makefile2:155: CMakeFiles/ITKv4.dir/all]
Error 2
3185 make[1]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/s
pack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build
-ueupzia'
3186 make: *** [Makefile:139: all] Error 2
See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-ants-2.2.0-ueupziahghrzhofjg6fiklq3xepib36p/spack-build-out.txt
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