List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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aoflagger 2.10.0

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libiconv-1.16-rveg745oel7pthzqe7iyusrxozpfhzha
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libbsd-0.10.0-qeelvlo7c4g7yzbkpjjuvkwidjkb63fc
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/pkgconf-1.7.3-e7n3ibmo3qglloicw627euk3653lj7dy
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/xz-5.2.5-nbhstuvzbff45w4irf5d63bwnoaydl5l
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libffi-3.3-k3dm6wbwvbt66d2dabx3xwi23jhkwf64
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/berkeley-db-18.1.40-bcpbh3jxr5snfw5botpbzrncua2jgxtk
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libsigsegv-2.12-7mdbq7aymwdyer55kqxtwkmabrqfrjio
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/fftw-3.3.9-i5xuuwnopybkpqzm2n7unqhphxv3ecz6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libunistring-0.9.10-yjv5iwj5bn2pdvrkto6afozns6vqfxqe
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/tar-1.32-4tib3w4bufsp5rmh77dedae6yqrfnztu
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/diffutils-3.7-4tdgwdjkarwx76hsznr273ee5knouaav
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/expat-2.2.10-ziohulkd3v5nlpgoikmhdsuvpwoldk5q
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/ncurses-6.2-3cvcdzzqxzuywrbb3fgurgwja7neml6e
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/util-linux-uuid-2.36-ph2w2yfbflydnufbyevsnljjmg576a22
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libxml2-2.9.10-cxwfsnmjxdlc3yylykvohwacbifuuo4b
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/m4-1.4.18-higyfcycqmi77nsmij4ttoph4decqvjg
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libidn2-2.3.0-qo3fl2gohzf6oitv3pe6z4cmep7gcfvg
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/readline-8.0-x67xwcqnux4xmbj3b7oms47n5fup44e3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libtool-2.4.6-heralap5rbm3tgxvlguunwf4tk7jvcri
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gettext-0.21-7vwvgn6bx6ay6x55ts7wckfucyvtig76
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/sqlite-3.34.0-u7kilxrpewq53ou4yb45ztf5dvzjcko4
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/openblas-0.3.13-e4ymtx6ghs7j536e6swzkv5aq4efghqi
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/autoconf-2.69-ou7nluauc5ehv42p3q56tvz4t746r4l7
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/texinfo-6.5-rlasgr2h5c4ut226stz6hruafkv7k7t6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/openssl-1.1.1j-de77zldhh5cmb3lcdens3lo2j5mypejs
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/help2man-1.47.16-wwig3h6o3wa7xncdekbopx7axaidgu6u
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/automake-1.16.3-5gcjddw55bul6jjqn7sfepr3qfs4rmow
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gmake-4.2.1-oskyfge5eadnxqvbwztvzaklbdeimomu
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/curl-7.74.0-7xoinjfgvrg7so3ko453wfp26r7zp4pk
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/cmake-3.19.5-jp3cfybxfwjhwjodfiuafqkc3t7wj6h3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bison-3.7.4-7ji3gfszhyld4j3uf7pbylo4m6rtjfdj
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/findutils-4.6.0-bltgzp74oqd75fbg4jbywy2seps574ur
==> Installing boost-1.66.0-2o34vic7ct5swbgyts4ayuwrmtgj3rmb
==> No binary for boost-1.66.0-2o34vic7ct5swbgyts4ayuwrmtgj3rmb found: installing from source
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/57/5721818253e6a0989583192f96782c4a98eb6204965316df9f5ad75819225ca9.tar.bz2
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/boost/python_jam.patch
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/boost/boost_218.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./b2' 'install' 'threading=multi' '-j' '16' '--user-config=/home/g9300001/u93001/spack-stage/spack-stage-boost-1.66.0-2o34vic7ct5swbgyts4ayuwrmtgj3rmb/spack-src/user-config.jam' 'variant=release' '-s' 'BZIP2_INCLUDE=/vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6/include' '-s' 'BZIP2_LIBPATH=/vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6/lib' '-s' 'ZLIB_INCLUDE=/vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj/include' '-s' 'ZLIB_LIBPATH=/vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj/lib' '-s' 'NO_LZMA=1' '-s' 'NO_ZSTD=1' 'link=static,shared' '--layout=system' 'toolset=clang' 'cxxstd=98' 'pch=off'

2 errors found in build log:
11729 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/object/life_support.o
11730 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/converter/registry.o
11731 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/errors.o
11732 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/converter/arg_to_python_base.o
11733 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/tuple.o
11734 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/link-static/pch-off/threadapi-p
thread/threading-multi/converter/builtin_converters.o
>> 11735 libs/python/src/converter/builtin_converters.cpp:51:14: error: ca
nnot initialize return object of type 'void *' with an rvalue of
type 'const char *'
11736 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0;
11737 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
11738 /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-
a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352/inc
lude/python3.8/unicodeobject.h:115:18: note: expanded from macro
'PyUnicode_Check'
11739 PyType_FastSubclass(Py_TYPE(op), Py_TPFLAGS_UNIC
ODE_SUBCLASS)
11740 ^
11741 /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-
a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352/inc
lude/python3.8/object.h:351:35: note: expanded from macro 'PyType
_FastSubclass'

...

14204 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/tuple.o
14205 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/dict.o
14206 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/str.o
14207 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/slice.o
14208 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/errors.o
14209 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clan
g-gnu-linux/release/cxxstd-98-iso/pch-off/threadapi-pthread/threa
ding-multi/converter/builtin_converters.o
>> 14210 libs/python/src/converter/builtin_converters.cpp:51:14: error: ca
nnot initialize return object of type 'void *' with an rvalue of
type 'const char *'
14211 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0;
14212 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
14213 /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-
a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352/inc
lude/python3.8/unicodeobject.h:115:18: note: expanded from macro
'PyUnicode_Check'
14214 PyType_FastSubclass(Py_TYPE(op), Py_TPFLAGS_UNIC
ODE_SUBCLASS)
14215 ^
14216 /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-
a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352/inc
lude/python3.8/object.h:351:35: note: expanded from macro 'PyType
_FastSubclass'

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-boost-1.66.0-2o34vic7ct5swbgyts4ayuwrmtgj3rmb/spack-build-out.txt

[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/py-setuptools-50.3.2-irb4bsrwqxduixxtdnehgwgg46gtgatg
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/cfitsio-3.49-6s6rdigciz5uav3ky7srfegzuwcypd4w
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/flex-2.6.4-lngohg7wxi576z7n4tkqga2zxw5dcim7
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/py-cython-0.29.21-abkjb4woka4v3i4qcrcuv2lv4zlmuyui
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/wcslib-7.3-wetscs4q64owbdiqj4xhl2y6tfsu3362
==> Installing py-numpy-1.20.1-6jeq7klzk3vrf4ft4gjvcyfqiyusyut5
==> No binary for py-numpy-1.20.1-6jeq7klzk3vrf4ft4gjvcyfqiyusyut5 found: installing from source
==> Warning: Skipping build of casacore-3.3.0-o5bpouongkk2qrsnwkno2l2ytusivxnc since boost-1.66.0-2o34vic7ct5swbgyts4ayuwrmtgj3rmb failed
==> Warning: Skipping build of aoflagger-2.10.0-su3e2ruuic34njienmiplmbbpo3xlomq since casacore-3.3.0-o5bpouongkk2qrsnwkno2l2ytusivxnc failed
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/3b/3bc63486a870294683980d76ec1e3efc786295ae00128f9ea38e2c6e74d5a60a.zip
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> py-numpy: Executing phase: 'install'
==> py-numpy: Successfully installed py-numpy-1.20.1-6jeq7klzk3vrf4ft4gjvcyfqiyusyut5
Fetch: 0.10s. Build: 13m 17.67s. Total: 13m 17.78s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/py-numpy-1.20.1-6jeq7klzk3vrf4ft4gjvcyfqiyusyut5
==> Error: aoflagger-2.10.0-su3e2ruuic34njienmiplmbbpo3xlomq: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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