List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bcl2fastq2 2.20.0.422

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
415417 In file included from ./boost/thread/once.hpp:20:
415418 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415419 In file included from ./boost/atomic.hpp:12:
>> 415420 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415421 typedef atomic<uintptr_t> atomic_uintptr_t;
415422 ^~~~~~~~~
415423 intptr_t
415424 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415425 typedef __intptr_t intptr_t;
415426 ^

...

415437 In file included from ./boost/spirit/home/classic/core/non_termi
nal/grammar.hpp:21:
415438 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/grammar.ipp:15:
415439 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/object_with_id.ipp:18:
415440 In file included from ./boost/thread/once.hpp:20:
415441 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415442 In file included from ./boost/atomic.hpp:12:
>> 415443 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415444 typedef atomic<uintptr_t> atomic_uintptr_t;
415445 ^~~~~~~~~
415446 intptr_t
415447 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415448 typedef __intptr_t intptr_t;
415449 ^

...

415460 In file included from ./boost/spirit/home/classic/core/non_termi
nal/grammar.hpp:21:
415461 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/grammar.ipp:15:
415462 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/object_with_id.ipp:18:
415463 In file included from ./boost/thread/once.hpp:20:
415464 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415465 In file included from ./boost/atomic.hpp:12:
>> 415466 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415467 typedef atomic<uintptr_t> atomic_uintptr_t;
415468 ^~~~~~~~~
415469 intptr_t
415470 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415471 typedef __intptr_t intptr_t;
415472 ^

...

415483 In file included from ./boost/spirit/home/classic/core/non_termi
nal/grammar.hpp:21:
415484 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/grammar.ipp:15:
415485 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/object_with_id.ipp:18:
415486 In file included from ./boost/thread/once.hpp:20:
415487 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415488 In file included from ./boost/atomic.hpp:12:
>> 415489 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415490 typedef atomic<uintptr_t> atomic_uintptr_t;
415491 ^~~~~~~~~
415492 intptr_t
415493 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415494 typedef __intptr_t intptr_t;
415495 ^

...

415506 In file included from ./boost/spirit/home/classic/core/non_termi
nal/grammar.hpp:21:
415507 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/grammar.ipp:15:
415508 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/object_with_id.ipp:18:
415509 In file included from ./boost/thread/once.hpp:20:
415510 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415511 In file included from ./boost/atomic.hpp:12:
>> 415512 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415513 typedef atomic<uintptr_t> atomic_uintptr_t;
415514 ^~~~~~~~~
415515 intptr_t
415516 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415517 typedef __intptr_t intptr_t;
415518 ^

...

415529 In file included from ./boost/spirit/home/classic/core/non_termi
nal/grammar.hpp:21:
415530 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/grammar.ipp:15:
415531 In file included from ./boost/spirit/home/classic/core/non_termi
nal/impl/object_with_id.ipp:18:
415532 In file included from ./boost/thread/once.hpp:20:
415533 In file included from ./boost/thread/pthread/once_atomic.hpp:20:
415534 In file included from ./boost/atomic.hpp:12:
>> 415535 ./boost/atomic/atomic.hpp:202:16: error: unknown type name 'uint
ptr_t'; did you mean 'intptr_t'?
415536 typedef atomic<uintptr_t> atomic_uintptr_t;
415537 ^~~~~~~~~
415538 intptr_t
415539 /usr/include/unistd.h:267:20: note: 'intptr_t' declared here
415540 typedef __intptr_t intptr_t;
415541 ^

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-boost-1.54.0-bwmh2kyvt4mvodp5j626god4mf27ojup/spack-build-out.txt

==> Installing gettext-0.21-s4jao3jggql5bgnynvyrujcp4i4g52jc
==> No binary for gettext-0.21-s4jao3jggql5bgnynvyrujcp4i4g52jc found: installing from source
==> Warning: Skipping build of bcl2fastq2-2.20.0.422-t4pjaessh76snz65jpmc6pqtrg4kthjc since boost-1.54.0-bwmh2kyvt4mvodp5j626god4mf27ojup failed
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/d2/d20fcbb537e02dcf1383197ba05bd0734ef7bf5db06bdb241eb69b7d16b73192.tar.xz
==> No patches needed for gettext
==> gettext: Executing phase: 'autoreconf'
==> gettext: Executing phase: 'configure'
==> gettext: Executing phase: 'build'
==> gettext: Executing phase: 'install'
==> gettext: Successfully installed gettext-0.21-s4jao3jggql5bgnynvyrujcp4i4g52jc
Fetch: 0.12s. Build: 42m 54.23s. Total: 42m 54.35s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gettext-0.21-s4jao3jggql5bgnynvyrujcp4i4g52jc
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/autoconf-2.69-ou7nluauc5ehv42p3q56tvz4t746r4l7
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/openssl-1.1.1j-de77zldhh5cmb3lcdens3lo2j5mypejs
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/automake-1.16.3-5gcjddw55bul6jjqn7sfepr3qfs4rmow
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/cmake-3.19.5-jp3cfybxfwjhwjodfiuafqkc3t7wj6h3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gmp-6.1.2-hkcgasicp2lcddhdrqb4p6kyuvprvkcd
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/mpfr-4.0.2-6cg7wcvb7f6wnxwbwuechonpdiyy5gzm
==> Installing gawk-5.1.0-yobosghtwmmhfijt2us27vek2uzxxesd
==> No binary for gawk-5.1.0-yobosghtwmmhfijt2us27vek2uzxxesd found: installing from source
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/cf/cf5fea4ac5665fd5171af4716baab2effc76306a9572988d5ba1078f196382bd.tar.xz
==> No patches needed for gawk
==> gawk: Executing phase: 'autoreconf'
==> gawk: Executing phase: 'configure'
==> gawk: Executing phase: 'build'
==> gawk: Executing phase: 'install'
==> gawk: Successfully installed gawk-5.1.0-yobosghtwmmhfijt2us27vek2uzxxesd
Fetch: 0.06s. Build: 4m 46.86s. Total: 4m 46.93s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gawk-5.1.0-yobosghtwmmhfijt2us27vek2uzxxesd
==> Error: bcl2fastq2-2.20.0.422-t4pjaessh76snz65jpmc6pqtrg4kthjc: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libgpg-error-1.37-laiuly5e4mtgiqizu4xgjq5gmp5oo6lo
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libgcrypt-1.9.1-mhik6akgrq4qmve5w76lp5op7a6zhgd2


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