List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

aoflagger 2.10.0

Compiler gcc 8.3.1
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/bzip2-1.0.8-aza2m2d7a4ufti4ri365ugpkhfvsymdw
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/readline-8.0-iqhf7czb2vboskrrj7zfyfabsdfar4vb
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/libtool-2.4.6-ebm5codfrqov3lfzax46po5qxm5as2vm
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gettext-0.21-xnay56olddhlxvbrewjlezpcshskiqjx
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/sqlite-3.34.0-fu26fz2rpzkzcwan4x3xkvgzmqdjv2bd
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gdbm-1.18.1-dckp76rs52mja6kl5mdetcij7suogcl2
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/perl-5.32.1-4xk7um6zbm3eno36n27pfwoekwnpea6o
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/openblas-0.3.13-ergxmlg5uglfwucqo73voidhswefo4js
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/help2man-1.47.16-wds6mls4vcr2kgdbyxneiyw5cfdpefm4
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/autoconf-2.69-4rljqbb7nrxev3z7cbjunuf4z5xugml5
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/openssl-1.1.1j-mbqxjonsxnfun7rgxhkolzicnweeolee
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/texinfo-6.5-dfrvkzcihe7nj5gu6zcpcompqudblvj5
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/bison-3.7.4-qrgnjmvuy6brncpavzbx32ksi7i6rcsn
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/automake-1.16.3-pc4rnmnlgzxlg2engfh4akv63uyker77
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/cmake-3.19.5-5sy74iurs2ftrrhebhdzaxliv45j34uw
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/python-3.8.8-o6kplwuomovfwkui67pr6uqp2qtr2rl4
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/curl-7.74.0-e2rgsxlenzbwhwwyafaksxsd2ec3573e
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gmake-4.2.1-hv5nxszpn4gdygdrx5oaekzuynh2xd4l
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/findutils-4.6.0-v5hltkrlbn3nbiww5dyadw4vcq3vjn2o
==> Installing boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty
==> No binary for boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/57/5721818253e6a0989583192f96782c4a98eb6204965316df9f5ad75819225ca9.tar.bz2
==> Applied patch /home/users/ea01/ea0108/all-test/gcc/spack/var/spack/repos/builtin/packages/boost/python_jam.patch
==> Applied patch /home/users/ea01/ea0108/all-test/gcc/spack/var/spack/repos/builtin/packages/boost/boost_218.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./b2' 'install' 'threading=multi' '-j' '16' '--user-config=/tmp/ea0108/spack-stage/spack-stage-boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty/spack-src/user-config.jam' 'variant=release' '-s' 'BZIP2_INCLUDE=/home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/bzip2-1.0.8-aza2m2d7a4ufti4ri365ugpkhfvsymdw/include' '-s' 'BZIP2_LIBPATH=/home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/bzip2-1.0.8-aza2m2d7a4ufti4ri365ugpkhfvsymdw/lib' '-s' 'ZLIB_INCLUDE=/home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/zlib-1.2.11-wytstv2k3w7gvjao7xbf6zlqpogktrmb/include' '-s' 'ZLIB_LIBPATH=/home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/zlib-1.2.11-wytstv2k3w7gvjao7xbf6zlqpogktrmb/lib' '-s' 'NO_LZMA=1' '-s' 'NO_ZSTD=1' 'link=static,shared' '--layout=system' 'toolset=gcc' 'cxxstd=98'

2 errors found in build log:
12887 );
12888 ^
12889 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/link-static/threadapi-pthread/threading-multi/errors.o
12890 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/link-static/threadapi-pthread/threading-multi/converter/a
rg_to_python_base.o
12891 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/link-static/threadapi-pthread/threading-multi/converter/b
uiltin_converters.o
12892 libs/python/src/converter/builtin_converters.cpp: In function 'vo
id* boost::python::converter::{anonymous}::convert_to_cstring(PyO
bject*)':
>> 12893 libs/python/src/converter/builtin_converters.cpp:51:35: error: in
valid conversion from 'const void*' to 'void*' [-fpermissive]
12894 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0
;
12895
12896 "/home/users/ea01/ea0108/all-test/gcc/spack/lib/spack/env/gcc
/g++" -O3 -finline-functions -Wno-inline -Wall -pthread -std=c+
+98 -DBOOST_ALL_NO_LIB=1 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_ST
ATIC_LIB -DNDEBUG -I"." -I"/home/users/ea01/ea0108/all-test/gcc/
spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/python-3.8.8-o6kplwuo
movfwkui67pr6uqp2qtr2rl4/include/python3.8" -c -o "bin.v2/libs/py
thon/build/gcc-gnu-8/release/cxxstd-98-iso/link-static/threadapi-
pthread/threading-multi/converter/builtin_converters.o" "libs/pyt
hon/src/converter/builtin_converters.cpp"
12897
12898 ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/rele
ase/cxxstd-98-iso/link-static/threadapi-pthread/threading-multi/c
onverter/builtin_converters.o...
12899 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/link-static/threadapi-pthread/threading-multi/str.o

...

17342 ./boost/mpl/assert.hpp:193:21: warning: unnecessary parentheses i
n declaration of 'assert_not_arg' [-Wparentheses]
17343 failed ************ (boost::mpl::not_<Pred>::************
17344 ^
17345 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/threadapi-pthread/threading-multi/converter/arg_to_python
_base.o
17346 gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/release/cxxstd
-98-iso/threadapi-pthread/threading-multi/converter/builtin_conve
rters.o
17347 libs/python/src/converter/builtin_converters.cpp: In function 'vo
id* boost::python::converter::{anonymous}::convert_to_cstring(PyO
bject*)':
>> 17348 libs/python/src/converter/builtin_converters.cpp:51:35: error: in
valid conversion from 'const void*' to 'void*' [-fpermissive]
17349 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0
;
17350
17351 "/home/users/ea01/ea0108/all-test/gcc/spack/lib/spack/env/gcc
/g++" -O3 -finline-functions -Wno-inline -Wall -pthread -fPIC -
std=c++98 -DBOOST_ALL_NO_LIB=1 -DBOOST_PYTHON_SOURCE -DNDEBUG -
I"." -I"/home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linu
x-rhel8-a64fx/gcc-8.3.1/python-3.8.8-o6kplwuomovfwkui67pr6uqp2qtr
2rl4/include/python3.8" -c -o "bin.v2/libs/python/build/gcc-gnu-8
/release/cxxstd-98-iso/threadapi-pthread/threading-multi/converte
r/builtin_converters.o" "libs/python/src/converter/builtin_conver
ters.cpp"
17352
17353 ...failed gcc.compile.c++ bin.v2/libs/python/build/gcc-gnu-8/rele
ase/cxxstd-98-iso/threadapi-pthread/threading-multi/converter/bui
ltin_converters.o...
17354 gcc.compile.c++ bin.v2/libs/program_options/build/gcc-gnu-8/relea
se/cxxstd-98-iso/threadapi-pthread/threading-multi/variables_map.
o

See build log for details:
/tmp/ea0108/spack-stage/spack-stage-boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty/spack-build-out.txt

[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/py-setuptools-50.3.2-ixkuccnzbftnw7dzoprueujripxqfulc
==> Installing cfitsio-3.49-hae4ubotkb7i5fmliaqq2kpv6dkrrxz6
==> No binary for cfitsio-3.49-hae4ubotkb7i5fmliaqq2kpv6dkrrxz6 found: installing from source
==> Warning: Skipping build of aoflagger-2.10.0-cygciuxij5cfisspoa74ajafy2ykv7s5 since boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty failed
==> Warning: Skipping build of casacore-3.3.0-mgbd2hz3uya23vum32lpzkd2fbgarh6g since boost-1.66.0-zffod4z2xapqsa3ri6f5xlejaerlvqty failed
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/5b/5b65a20d5c53494ec8f638267fca4a629836b7ac8dd0ef0266834eab270ed4b3.tar.gz
==> No patches needed for cfitsio
==> cfitsio: Executing phase: 'autoreconf'
==> cfitsio: Executing phase: 'configure'
==> cfitsio: Executing phase: 'build'
==> cfitsio: Executing phase: 'install'
==> cfitsio: Successfully installed cfitsio-3.49-hae4ubotkb7i5fmliaqq2kpv6dkrrxz6
Fetch: 2.81s. Build: 54.79s. Total: 57.60s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/cfitsio-3.49-hae4ubotkb7i5fmliaqq2kpv6dkrrxz6
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/flex-2.6.4-ugqqttfno545gtgizgypkf5duz7fgopu
==> Installing py-cython-0.29.21-ozed3b6yougprmtnvfd2mghtsflmnyjm
==> No binary for py-cython-0.29.21-ozed3b6yougprmtnvfd2mghtsflmnyjm found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/e5/e57acb89bd55943c8d8bf813763d20b9099cc7165c0f16b707631a7654be9cad.tar.gz
==> No patches needed for py-cython
==> py-cython: Executing phase: 'build'
==> py-cython: Executing phase: 'install'
==> py-cython: Successfully installed py-cython-0.29.21-ozed3b6yougprmtnvfd2mghtsflmnyjm
Fetch: 1.96s. Build: 4m 50.15s. Total: 4m 52.10s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/py-cython-0.29.21-ozed3b6yougprmtnvfd2mghtsflmnyjm
==> Installing wcslib-7.3-megtcjkqjowg3ofqdkklah42oaibdodp
==> No binary for wcslib-7.3-megtcjkqjowg3ofqdkklah42oaibdodp found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/4b/4b01cf425382a26ca4f955ed6841a5f50c55952a2994367f8e067e4183992961.tar.bz2
==> No patches needed for wcslib
==> wcslib: Executing phase: 'autoreconf'
==> wcslib: Executing phase: 'configure'
==> wcslib: Executing phase: 'build'
==> wcslib: Executing phase: 'install'
==> wcslib: Successfully installed wcslib-7.3-megtcjkqjowg3ofqdkklah42oaibdodp
Fetch: 2.04s. Build: 1m 27.72s. Total: 1m 29.76s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/wcslib-7.3-megtcjkqjowg3ofqdkklah42oaibdodp
==> Installing py-numpy-1.20.1-vpviii7zyspevuyn7offlyscujnftr4j
==> No binary for py-numpy-1.20.1-vpviii7zyspevuyn7offlyscujnftr4j found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/3b/3bc63486a870294683980d76ec1e3efc786295ae00128f9ea38e2c6e74d5a60a.zip
==> Applied patch /home/users/ea01/ea0108/all-test/gcc/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> py-numpy: Executing phase: 'install'
==> py-numpy: Successfully installed py-numpy-1.20.1-vpviii7zyspevuyn7offlyscujnftr4j
Fetch: 3.72s. Build: 12m 14.51s. Total: 12m 18.23s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/py-numpy-1.20.1-vpviii7zyspevuyn7offlyscujnftr4j
==> Error: aoflagger-2.10.0-cygciuxij5cfisspoa74ajafy2ykv7s5: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


<= Back to list