List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bcl2fastq2 2.20.0.422

Compiler gcc 8.3.1
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
all -pthread -fPIC "-std=c++98" -DBOOST_ALL_DYN_LINK=1 -DBOOST_AL
L_NO_LIB=1 -DNDEBUG -I"." -c -o "bin.v2/libs/wave/build/gcc-8/re
lease/threading-multi/instantiate_predef_macros.o" "libs/wave/src
/instantiate_predef_macros.cpp"
70495
70496 ...failed gcc.compile.c++ bin.v2/libs/wave/build/gcc-8/release/th
reading-multi/instantiate_predef_macros.o...

...

71074 from ./boost/spirit/home/classic/core/non_termin
al/grammar.hpp:21,
71075 from ./boost/spirit/home/classic/core.hpp:42,
71076 from ./boost/spirit/include/classic_core.hpp:11,
71077 from ./boost/wave/grammars/cpp_grammar.hpp:14,
71078 from libs/wave/src/instantiate_cpp_grammar.cpp:2
4:
71079 ./boost/atomic/atomic.hpp: At global scope:
>> 71080 ./boost/atomic/atomic.hpp:202:16: error: 'uintptr_t' was not decl
ared in this scope
71081 typedef atomic<uintptr_t> atomic_uintptr_t;
71082 ^~~~~~~~~
71083 ./boost/atomic/atomic.hpp:202:16: note: suggested alternative: 'i
ntptr_t'
71084 typedef atomic<uintptr_t> atomic_uintptr_t;
71085 ^~~~~~~~~
71086 intptr_t
>> 71087 ./boost/atomic/atomic.hpp:202:25: error: template argument 1 is i
nvalid
71088 typedef atomic<uintptr_t> atomic_uintptr_t;
71089 ^
71090
71091 "/home/users/ea01/ea0108/all-test/gcc/spack/lib/spack/env/gcc
/g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -W
all -pthread -fPIC "-std=c++98" -DBOOST_ALL_DYN_LINK=1 -DBOOST_AL
L_NO_LIB=1 -DNDEBUG -I"." -c -o "bin.v2/libs/wave/build/gcc-8/re
lease/threading-multi/instantiate_cpp_grammar.o" "libs/wave/src/i
nstantiate_cpp_grammar.cpp"
71092
71093 ...failed gcc.compile.c++ bin.v2/libs/wave/build/gcc-8/release/th
reading-multi/instantiate_cpp_grammar.o...

...

71671 from ./boost/spirit/home/classic/core/non_termin
al/grammar.hpp:21,
71672 from ./boost/spirit/home/classic/core.hpp:42,
71673 from ./boost/spirit/include/classic_core.hpp:11,
71674 from ./boost/wave/grammars/cpp_intlit_grammar.hp
p:16,
71675 from libs/wave/src/instantiate_cpp_literalgrs.cp
p:24:
71676 ./boost/atomic/atomic.hpp: At global scope:
>> 71677 ./boost/atomic/atomic.hpp:202:16: error: 'uintptr_t' was not decl
ared in this scope
71678 typedef atomic<uintptr_t> atomic_uintptr_t;
71679 ^~~~~~~~~
71680 ./boost/atomic/atomic.hpp:202:16: note: suggested alternative: 'i
ntptr_t'
71681 typedef atomic<uintptr_t> atomic_uintptr_t;
71682 ^~~~~~~~~
71683 intptr_t
>> 71684 ./boost/atomic/atomic.hpp:202:25: error: template argument 1 is i
nvalid
71685 typedef atomic<uintptr_t> atomic_uintptr_t;
71686 ^
71687
71688 "/home/users/ea01/ea0108/all-test/gcc/spack/lib/spack/env/gcc
/g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -W
all -pthread -fPIC "-std=c++98" -DBOOST_ALL_DYN_LINK=1 -DBOOST_AL
L_NO_LIB=1 -DNDEBUG -I"." -c -o "bin.v2/libs/wave/build/gcc-8/re
lease/threading-multi/instantiate_cpp_literalgrs.o" "libs/wave/sr
c/instantiate_cpp_literalgrs.cpp"
71689
71690 ...failed gcc.compile.c++ bin.v2/libs/wave/build/gcc-8/release/th
reading-multi/instantiate_cpp_literalgrs.o...

...

72268 from ./boost/spirit/home/classic/core/non_termin
al/grammar.hpp:21,
72269 from ./boost/spirit/home/classic/core.hpp:42,
72270 from ./boost/spirit/include/classic_core.hpp:11,
72271 from ./boost/wave/grammars/cpp_expression_gramma
r.hpp:17,
72272 from libs/wave/src/instantiate_cpp_exprgrammar.c
pp:24:
72273 ./boost/atomic/atomic.hpp: At global scope:
>> 72274 ./boost/atomic/atomic.hpp:202:16: error: 'uintptr_t' was not decl
ared in this scope
72275 typedef atomic<uintptr_t> atomic_uintptr_t;
72276 ^~~~~~~~~
72277 ./boost/atomic/atomic.hpp:202:16: note: suggested alternative: 'i
ntptr_t'
72278 typedef atomic<uintptr_t> atomic_uintptr_t;
72279 ^~~~~~~~~
72280 intptr_t
>> 72281 ./boost/atomic/atomic.hpp:202:25: error: template argument 1 is i
nvalid
72282 typedef atomic<uintptr_t> atomic_uintptr_t;
72283 ^
72284
72285 "/home/users/ea01/ea0108/all-test/gcc/spack/lib/spack/env/gcc
/g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -W
all -pthread -fPIC "-std=c++98" -DBOOST_ALL_DYN_LINK=1 -DBOOST_AL
L_NO_LIB=1 -DNDEBUG -I"." -c -o "bin.v2/libs/wave/build/gcc-8/re
lease/threading-multi/instantiate_cpp_exprgrammar.o" "libs/wave/s
rc/instantiate_cpp_exprgrammar.cpp"
72286
72287 ...failed gcc.compile.c++ bin.v2/libs/wave/build/gcc-8/release/th
reading-multi/instantiate_cpp_exprgrammar.o...

See build log for details:
/tmp/ea0108/spack-stage/spack-stage-boost-1.54.0-tw4g3mfkxve6a5nefhqs3zuzw43d6etf/spack-build-out.txt

==> Installing gettext-0.21-56xycteaddu5dulhg6xmo3mkzsn6zm2y
==> No binary for gettext-0.21-56xycteaddu5dulhg6xmo3mkzsn6zm2y found: installing from source
==> Warning: Skipping build of bcl2fastq2-2.20.0.422-pynx7avhb55onzlpzlh6t5ghhwq4yf6a since boost-1.54.0-tw4g3mfkxve6a5nefhqs3zuzw43d6etf failed
==> Using cached archive: /home/users/ea01/ea0108/all-test/gcc/spack/var/spack/cache/_source-cache/archive/d2/d20fcbb537e02dcf1383197ba05bd0734ef7bf5db06bdb241eb69b7d16b73192.tar.xz
==> No patches needed for gettext
==> gettext: Executing phase: 'autoreconf'
==> gettext: Executing phase: 'configure'
==> gettext: Executing phase: 'build'
==> gettext: Executing phase: 'install'
==> gettext: Successfully installed gettext-0.21-56xycteaddu5dulhg6xmo3mkzsn6zm2y
Fetch: 0.10s. Build: 23m 18.35s. Total: 23m 18.45s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gettext-0.21-56xycteaddu5dulhg6xmo3mkzsn6zm2y
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gdbm-1.18.1-dckp76rs52mja6kl5mdetcij7suogcl2
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/perl-5.32.1-4xk7um6zbm3eno36n27pfwoekwnpea6o
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/autoconf-2.69-4rljqbb7nrxev3z7cbjunuf4z5xugml5
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/openssl-1.1.1j-mbqxjonsxnfun7rgxhkolzicnweeolee
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/automake-1.16.3-pc4rnmnlgzxlg2engfh4akv63uyker77
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/cmake-3.19.5-5sy74iurs2ftrrhebhdzaxliv45j34uw
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gmp-6.1.2-v7t3rhfracjljwg6jja44njlx323dg7z
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/mpfr-4.0.2-ybonjjb6pixc2aa7orkxz2kcn5ma5n3y
==> Installing gawk-5.1.0-cehuzihcgszhzbmpau34jpepz7xjqsy7
==> No binary for gawk-5.1.0-cehuzihcgszhzbmpau34jpepz7xjqsy7 found: installing from source
==> Using cached archive: /home/users/ea01/ea0108/all-test/gcc/spack/var/spack/cache/_source-cache/archive/cf/cf5fea4ac5665fd5171af4716baab2effc76306a9572988d5ba1078f196382bd.tar.xz
==> No patches needed for gawk
==> gawk: Executing phase: 'autoreconf'
==> gawk: Executing phase: 'configure'
==> gawk: Executing phase: 'build'
==> gawk: Executing phase: 'install'
==> gawk: Successfully installed gawk-5.1.0-cehuzihcgszhzbmpau34jpepz7xjqsy7
Fetch: 0.04s. Build: 2m 36.54s. Total: 2m 36.59s.
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/gawk-5.1.0-cehuzihcgszhzbmpau34jpepz7xjqsy7
==> Error: bcl2fastq2-2.20.0.422-pynx7avhb55onzlpzlh6t5ghhwq4yf6a: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/libgpg-error-1.37-2clljvxxnqyjs3iou4myexzfimpwvn7o
[+] /home/users/ea01/ea0108/all-test/gcc/spack/opt/spack/linux-rhel8-a64fx/gcc-8.3.1/libgcrypt-1.9.1-nsw4rk5p5nt3wgok6v5xadgblhquoa37


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