List of Open Source Software which can be built on Fugaku

Spack logo
Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

allpaths-lg 52488

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Installing allpaths-lg-52488-odozoyidkpif4ydv522zqw5gdeocqst3
==> No binary for allpaths-lg-52488-odozoyidkpif4ydv522zqw5gdeocqst3 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/03/035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542.tar.gz
==> No patches needed for allpaths-lg
==> allpaths-lg: Executing phase: 'autoreconf'
==> allpaths-lg: Executing phase: 'configure'
==> allpaths-lg: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

14 errors found in build log:
123 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT Mempool.o -MD -MP -MF .deps/Mempool.Tpo -c -o Mempool.o `test -f 'feudal/Mempool.cc' || echo './'`feud
al/Mempool.cc
124 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT SupportedHyperBasevector4.o -MD -MP -MF .deps/SupportedHyperBasevector4.Tpo -c -o SupportedHyperBaseve
ctor4.o `test -f 'paths/long/SupportedHyperBasevector4.cc' || echo './'`paths/long/SupportedHyperBasevector4.cc
125 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT CorrectPatch.o -MD -MP -MF .deps/CorrectPatch.Tpo -c -o CorrectPatch.o `test -f 'paths/CorrectPatch.cc
' || echo './'`paths/CorrectPatch.cc
126 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT Basevector.o -MD -MP -MF .deps/Basevector.Tpo -c -o Basevector.o Basevector.cc
127 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT VecOverlap.o -MD -MP -MF .deps/VecOverlap.Tpo -c -o VecOverlap.o VecOverlap.cc
128 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DPACKAGE_NAME=\"AllPathsLG\" -DPACKAGE_TARNAM
E=\"allpathslg\" -DPACKAGE_VERSION=\"52488\" -DPACKAGE_STRING=\"AllPathsLG\ 52488\" -DPACKAGE_BUGREPORT=\"crdhe
lp@broadinstitute.org\" -DPACKAGE=\"allpathslg\" -DVERSION=\"52488\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHA
VE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -D
HAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_PTHREAD=1 -I. -DRELEASE=3.0 -
DMAKE_OS_RELEASE=4.18.0-80.el8.aarch64 -DMAKE_RELEASE=3.0 -DSVN_VERSION=52488 -pthread -fopenmp -g -O2 -std=c+
+11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -
Wno-parentheses -Wno-unused-parameter -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -ggdb -DND
EBUG -MT HKPMerger.o -MD -MP -MF .deps/HKPMerger.Tpo -c -o HKPMerger.o `test -f 'paths/HKPMerger.cc' || echo '.
/'`paths/HKPMerger.cc
>> 129 clang-9clang-9: : errorerror: : unknown argument: '-fno-nonansi-builtins'unknown argument: '-fno-nonansi-builti
ns'
130
>> 131 clang-9: error: unknown argument: '-fno-nonansi-builtins'
>> 132 clang-9: error: unknown argument: '-fno-nonansi-builtins'
>> 133 clang-9: error: unknown argument: '-fno-nonansi-builtins'
134 make[1]: *** [Makefile:2682: AllOfOutput.o] Error 1
135 make[1]: *** Waiting for unfinished jobs....
136 make[1]: *** [Makefile:2696: ScaffoldGraphIntegrity.o] Error 1
137 make[1]: *** [Makefile:2752: EvalScaffoldsUtils.o] Error 1
138 make[1]: *** [Makefile:2724: Combinatorics.o] Error 1
>> 139 clang-9: error: unknown argument: '-fno-nonansi-builtins'
140 make[1]: *** [Makefile:2668: HyperBasevector.o] Error 1
>> 141 clang-9: error: unknown argument: '-fno-nonansi-builtins'
142 make[1]: *** [Makefile:2633: Floatvector.o] Error 1
143 make[1]: *** [Makefile:2766: EvalUtils.o] Error 1
>> 144 clang-9: error: unknown argument: '-fno-nonansi-builtins'
>> 145 clang-9: error: unknown argument: '-fno-nonansi-builtins'
>> 146 clang-9: error: unknown argument: '-fno-nonansi-builtins'clang-9
147 : error: unknown argument: '-fno-nonansi-builtins'
>> 148 clang-9: error: unknown argument: '-fno-nonansi-builtins'
149 make[1]: *** [Makefile:2633: Basevector.o] Error 1
150 make[1]: *** [Makefile:2822: HKPMerger.o] Error 1
151 make[1]: *** [Makefile:2633: VecOverlap.o] Error 1
152 make[1]: *** [Makefile:2794: SupportedHyperBasevector4.o] Error 1
153 make[1]: *** [Makefile:2654: CleanEfasta.o] Error 1
>> 154 clang-9: error: unknown argument: '-fno-nonansi-builtins'
155 make[1]: *** [Makefile:2808: CorrectPatch.o] Error 1
>> 156 clang-9: error: unknown argument: '-fno-nonansi-builtins'
>> 157 clang-9: error: unknown argument: '-fno-nonansi-builtins'
158 make[1]: *** [Makefile:2710: ErrNo.o] Error 1
>> 159 clang-9: error: unknown argument: '-fno-nonansi-builtins'
160 make[1]: *** [Makefile:2738: Mutmer.o] Error 1
161 make[1]: *** [Makefile:2780: Mempool.o] Error 1
162 make[1]: Leaving directory '/tmp/r0007/spack-stage/spack-stage-allpaths-lg-52488-odozoyidkpif4ydv522zqw5gdeocqs
t3/spack-src/src'
163 make: *** [Makefile:284: all-recursive] Error 1

See build log for details:
/tmp/r0007/spack-stage/spack-stage-allpaths-lg-52488-odozoyidkpif4ydv522zqw5gdeocqst3/spack-build-out.txt


<= Back to list