List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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aoflagger 2.10.0

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
'./b2' 'install' 'threading=multi' '-j' '16' '--user-config=/tmp/r0007/spack-stage/spack-stage-boost-1.66.0-tbyyj42hvbgt3xdbvnd72tuoz4w26bac/spack-src/user-config.jam' 'variant=release' '-s' 'BZIP2_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/include' '-s' 'BZIP2_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/lib' '-s' 'ZLIB_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/include' '-s' 'ZLIB_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/lib' '-s' 'NO_LZMA=1' '-s' 'NO_ZSTD=1' 'link=static,shared' '--layout=system' 'toolset=clang' 'cxxstd=98'

4 errors found in build log:
377 clang-linux.compile.c++.without-pth bin.v2/libs/regex/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-s
tatic/threadapi-pthread/threading-multi/regex_traits_defaults.o
378 common.copy /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.66.0-tb
yyj42hvbgt3xdbvnd72tuoz4w26bac/include/boost/unordered_set.hpp
379 common.copy /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.66.0-tb
yyj42hvbgt3xdbvnd72tuoz4w26bac/include/boost/unordered_map.hpp
380 common.copy /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.66.0-tb
yyj42hvbgt3xdbvnd72tuoz4w26bac/include/boost/type_traits.hpp
381 common.copy /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.66.0-tb
yyj42hvbgt3xdbvnd72tuoz4w26bac/include/boost/type_index.hpp
382 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-static/thr
eadapi-pthread/threading-multi/../src/tr1/pch.hpp.pth
>> 383 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
384
385 rm -f -f "bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-static/threadapi-pthread/t
hreading-multi/../src/tr1/pch.hpp.pth" && "/fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++"
-c -x c++-header -O3 -Wno-inline -Wall -pthread -std=c++98 -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -D
NDEBUG -I"." -I"libs/math/src/tr1" -Xclang -emit-pth -o "bin.v2/libs/math/build/clang-gnu-linux-20.1/release/
cxxstd-98-iso/link-static/threadapi-pthread/threading-multi/../src/tr1/pch.hpp.pth" "libs/math/build/../src/t
r1/pch.hpp"
386
387 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/../src/tr1/pch.hpp.pth...
388 ...skipped <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-static/threadapi-pthread/
threading-multi>assoc_laguerre.o for lack of <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-
iso/link-static/threadapi-pthread/threading-multi>../src/tr1/pch.hpp.pth...
389 ...skipped <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-static/threadapi-pthread/
threading-multi>assoc_legendre.o for lack of <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-
iso/link-static/threadapi-pthread/threading-multi>../src/tr1/pch.hpp.pth...

...

11765 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/converter/registry.o
11766 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/long.o
11767 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/errors.o
11768 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/dict.o
11769 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/tuple.o
11770 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/link-
static/threadapi-pthread/threading-multi/converter/builtin_converters.o
>> 11771 libs/python/src/converter/builtin_converters.cpp:51:14: error: cannot initialize return object of type 'void
*' with an rvalue of type 'const char *'
11772 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0;
11773 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
11774 /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/python-3.8.8-yqj3nu5q2nqgza
kxdtanpoq3z5pi4bhe/include/python3.8/unicodeobject.h:115:18: note: expanded from macro 'PyUnicode_Check'
11775 PyType_FastSubclass(Py_TYPE(op), Py_TPFLAGS_UNICODE_SUBCLASS)
11776 ^
11777 /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/python-3.8.8-yqj3nu5q2nqgza
kxdtanpoq3z5pi4bhe/include/python3.8/object.h:351:35: note: expanded from macro 'PyType_FastSubclass'

...

14035 #define offsetof(t, d) __builtin_offsetof(t, d)
14036 ^ ~
14037 11 warnings generated.
14038 clang-linux.compile.c++.without-pth bin.v2/libs/log/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadap
i-pthread/threading-multi/spirit_encoding.o
14039 clang-linux.compile.c++.without-pth bin.v2/libs/log/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadap
i-pthread/threading-multi/syslog_backend.o
14040 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadapi-pthre
ad/threading-multi/../src/tr1/pch.hpp.pth
>> 14041 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
14042
14043 rm -f -f "bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadapi-pthread/threading-mul
ti/../src/tr1/pch.hpp.pth" && "/fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++" -c -x c++-he
ader -O3 -Wno-inline -Wall -pthread -fPIC -std=c++98 -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -DBOOST_
MATH_TR1_DYN_LINK=1 -DNDEBUG -I"." -I"libs/math/src/tr1" -Xclang -emit-pth -o "bin.v2/libs/math/build/clang-g
nu-linux-20.1/release/cxxstd-98-iso/threadapi-pthread/threading-multi/../src/tr1/pch.hpp.pth" "libs/math/buil
d/../src/tr1/pch.hpp"
14044
14045 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/../src/tr1/pch.hpp.pth...
14046 ...skipped <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadapi-pthread/threading-mu
lti>assoc_laguerre.o for lack of <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadap
i-pthread/threading-multi>../src/tr1/pch.hpp.pth...
14047 ...skipped <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadapi-pthread/threading-mu
lti>assoc_legendre.o for lack of <pbin.v2/libs/math/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threadap
i-pthread/threading-multi>../src/tr1/pch.hpp.pth...

...

14225 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/slice.o
14226 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/object/life_support.o
14227 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/dict.o
14228 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/str.o
14229 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/converter/arg_to_python_base.o
14230 clang-linux.compile.c++.without-pth bin.v2/libs/python/build/clang-gnu-linux-20.1/release/cxxstd-98-iso/threa
dapi-pthread/threading-multi/converter/builtin_converters.o
>> 14231 libs/python/src/converter/builtin_converters.cpp:51:14: error: cannot initialize return object of type 'void
*' with an rvalue of type 'const char *'
14232 return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0;
14233 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
14234 /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/python-3.8.8-yqj3nu5q2nqgza
kxdtanpoq3z5pi4bhe/include/python3.8/unicodeobject.h:115:18: note: expanded from macro 'PyUnicode_Check'
14235 PyType_FastSubclass(Py_TYPE(op), Py_TPFLAGS_UNICODE_SUBCLASS)
14236 ^
14237 /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/python-3.8.8-yqj3nu5q2nqgza
kxdtanpoq3z5pi4bhe/include/python3.8/object.h:351:35: note: expanded from macro 'PyType_FastSubclass'

See build log for details:
/tmp/r0007/spack-stage/spack-stage-boost-1.66.0-tbyyj42hvbgt3xdbvnd72tuoz4w26bac/spack-build-out.txt

[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/findutils-4.6.0-352kidjoctyidtu54vel57amnmo57w7n
==> Installing py-cython-0.29.21-zi2dzsfgzkpdu7yh2duhks2l72smma76
==> No binary for py-cython-0.29.21-zi2dzsfgzkpdu7yh2duhks2l72smma76 found: installing from source
==> Warning: Skipping build of aoflagger-2.10.0-h4jqwpxbuoo5553sbjoqyv7kze4udp2q since boost-1.66.0-tbyyj42hvbgt3xdbvnd72tuoz4w26bac failed
==> Warning: Skipping build of casacore-3.3.0-welzgunrhcrlkhpr6fmywydclh6zsv5k since boost-1.66.0-tbyyj42hvbgt3xdbvnd72tuoz4w26bac failed
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/e5/e57acb89bd55943c8d8bf813763d20b9099cc7165c0f16b707631a7654be9cad.tar.gz
==> No patches needed for py-cython
==> py-cython: Executing phase: 'build'
==> py-cython: Executing phase: 'install'
==> py-cython: Successfully installed py-cython-0.29.21-zi2dzsfgzkpdu7yh2duhks2l72smma76
Fetch: 0.14s. Build: 1m 37.56s. Total: 1m 37.70s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/py-cython-0.29.21-zi2dzsfgzkpdu7yh2duhks2l72smma76
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/flex-2.6.4-7kgqsxhl2c75p65u2vrp3mblzxybhqja
==> Installing py-numpy-1.20.1-byzhmgjpjbmzmpwbhhqf6wu4qbgrd3st
==> No binary for py-numpy-1.20.1-byzhmgjpjbmzmpwbhhqf6wu4qbgrd3st found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/3b/3bc63486a870294683980d76ec1e3efc786295ae00128f9ea38e2c6e74d5a60a.zip
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> py-numpy: Executing phase: 'install'
==> py-numpy: Successfully installed py-numpy-1.20.1-byzhmgjpjbmzmpwbhhqf6wu4qbgrd3st
Fetch: 2.12s. Build: 3m 36.71s. Total: 3m 38.83s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/py-numpy-1.20.1-byzhmgjpjbmzmpwbhhqf6wu4qbgrd3st
==> Installing wcslib-7.3-ttqttynfozawlpwlzw5nby6wqo5vwwnq
==> No binary for wcslib-7.3-ttqttynfozawlpwlzw5nby6wqo5vwwnq found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/4b/4b01cf425382a26ca4f955ed6841a5f50c55952a2994367f8e067e4183992961.tar.bz2
==> No patches needed for wcslib
==> wcslib: Executing phase: 'autoreconf'
==> wcslib: Executing phase: 'configure'
==> wcslib: Executing phase: 'build'
==> wcslib: Executing phase: 'install'
==> wcslib: Successfully installed wcslib-7.3-ttqttynfozawlpwlzw5nby6wqo5vwwnq
Fetch: 0.15s. Build: 21.00s. Total: 21.15s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/wcslib-7.3-ttqttynfozawlpwlzw5nby6wqo5vwwnq
==> Error: aoflagger-2.10.0-h4jqwpxbuoo5553sbjoqyv7kze4udp2q: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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