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  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
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autodock-vina 1_1_2

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
==> Installing boost-1.65.0-ykdfue4dreaks2vsl6p2rjrjk4x334np
==> No binary for boost-1.65.0-ykdfue4dreaks2vsl6p2rjrjk4x334np found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/ea/ea26712742e2fb079c2a566a31f3266973b76e38222b9f88b387e3c8b2f9902c.tar.bz2
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/boost/boost_218.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./b2' 'install' 'threading=multi' '-j' '16' '--user-config=/tmp/r0007/spack-stage/spack-stage-boost-1.65.0-ykdfue4dreaks2vsl6p2rjrjk4x334np/spack-src/user-config.jam' 'variant=release' '-s' 'BZIP2_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/include' '-s' 'BZIP2_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/lib' '-s' 'ZLIB_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/include' '-s' 'ZLIB_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/lib' '-s' 'NO_LZMA=1' '-s' 'NO_ZSTD=1' 'link=static,shared' '--layout=system' 'toolset=clang'

2 errors found in build log:
205 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/..
206 common.mkdir bin.v2/libs/iostreams/build/clang-linux-20.1/release/link-static/threading-multi
207 common.mkdir bin.v2/libs/date_time/build/clang-linux-20.1/release/link-static/threading-multi/gregorian
208 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src
209 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src/tr1
210 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../
src/tr1/pch.hpp.pth
>> 211 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
212
213 rm -f "bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src/tr1/pch.hpp.pth
" && "/fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++" -c -x c++-header -O3 -Wno-inline -W
all -pthread -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -DNDEBUG -I"." -I"libs/math/src/tr1" -Xclang -
emit-pth -o "bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src/tr1/pch.hpp
.pth" "libs/math/build/../src/tr1/pch.hpp"
214
215 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading
-multi/../src/tr1/pch.hpp.pth...
216 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi>assoc_laguerre.o f
or lack of <pbin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi>../src/tr1/pch.hpp
.pth...
217 clang-linux.compile.c++.without-pth bin.v2/libs/exception/build/clang-linux-20.1/release/link-static/thread
ing-multi/clone_current_exception_non_intrusive.o

...

20426 clang-linux.compile.c++.without-pth bin.v2/libs/log/build/clang-linux-20.1/release/threading-multi/posix/ob
ject_name.o
20427 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi
20428 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/..
20429 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src
20430 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1
20431 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1/pch.
hpp.pth
>> 20432 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
20433
20434 rm -f "bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1/pch.hpp.pth" && "/fefs/
home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++" -c -x c++-header -O3 -Wno-inline -Wall -pthread
-fPIC -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -DBOOST_MATH_TR1_DYN_LINK=1 -DNDEBUG -I"." -I"libs/m
ath/src/tr1" -Xclang -emit-pth -o "bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/t
r1/pch.hpp.pth" "libs/math/build/../src/tr1/pch.hpp"
20435
20436 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../sr
c/tr1/pch.hpp.pth...
20437 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>assoc_laguerre.o for lack of <
pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>../src/tr1/pch.hpp.pth...
20438 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>assoc_legendre.o for lack of <
pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>../src/tr1/pch.hpp.pth...

See build log for details:
/tmp/r0007/spack-stage/spack-stage-boost-1.65.0-ykdfue4dreaks2vsl6p2rjrjk4x334np/spack-build-out.txt

==> Warning: Skipping build of autodock-vina-1_1_2-drpepdlz464xke3mwzqqkwiqwonkjire since boost-1.65.0-ykdfue4dreaks2vsl6p2rjrjk4x334np failed
==> Error: autodock-vina-1_1_2-drpepdlz464xke3mwzqqkwiqwonkjire: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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