List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bcl2fastq2 2.20.0.422

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/xz-5.2.5-g555znztsjyxwvh7ogp5tw2logq3ksnt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libsigsegv-2.12-qplpwsrxudbdb2ob3ecjlptzd5vvh7oe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/autoconf-archive-2019.01.06-4vuw5wdrgau7hvi4dykkzdzl7ftapa2l
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/tar-1.32-5r2igeglgmgqoin544y3mgcv2yhofa76
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
==> Installing libxml2-2.7.8-vybuaqpdf6xsyz2hxdbu5xurfbe72exr
==> No binary for libxml2-2.7.8-vybuaqpdf6xsyz2hxdbu5xurfbe72exr found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/cd/cda23bc9ebd26474ca8f3d67e7d1c4a1f1e7106364b690d822e009fdc3c417ec.tar.gz
==> Using cached archive: /fefs/home/r0007/all-test/arm/spack/var/spack/cache/_source-cache/archive/96/96151685cec997e1f9f3387e3626d61e6284d4d6e66e0e440c209286c03e9cc7.tar.gz
==> Moving resource stage
source : /tmp/r0007/spack-stage/resource-xmlts-vybuaqpdf6xsyz2hxdbu5xurfbe72exr/spack-src/
destination : /tmp/r0007/spack-stage/spack-stage-libxml2-2.7.8-vybuaqpdf6xsyz2hxdbu5xurfbe72exr/spack-src/xmlconf
==> Ran patch() for libxml2
==> libxml2: Executing phase: 'autoreconf'
==> libxml2: Executing phase: 'configure'
==> libxml2: Executing phase: 'build'
==> libxml2: Executing phase: 'install'
==> libxml2: Successfully installed libxml2-2.7.8-vybuaqpdf6xsyz2hxdbu5xurfbe72exr
Fetch: 0.17s. Build: 47.80s. Total: 47.96s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxml2-2.7.8-vybuaqpdf6xsyz2hxdbu5xurfbe72exr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/m4-1.4.18-jk4zefridpuwa4jhmesx73litjev7zjw
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
==> Installing libxslt-1.1.26-jhuqfdbses4zdavicr6ee3ohb6nx3if4
==> No binary for libxslt-1.1.26-jhuqfdbses4zdavicr6ee3ohb6nx3if4 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/55/55dd52b42861f8a02989d701ef716d6280bfa02971e967c285016f99c66e3db1.tar.gz
==> No patches needed for libxslt
==> libxslt: Executing phase: 'autoreconf'
==> libxslt: Executing phase: 'configure'
==> libxslt: Executing phase: 'build'
==> libxslt: Executing phase: 'install'
==> libxslt: Successfully installed libxslt-1.1.26-jhuqfdbses4zdavicr6ee3ohb6nx3if4
Fetch: 0.14s. Build: 25.09s. Total: 25.23s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxslt-1.1.26-jhuqfdbses4zdavicr6ee3ohb6nx3if4
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libtool-2.4.6-g46uuv7kjhn24vxxut7m5ct7gnux25tt
==> Installing boost-1.54.0-dsxq7qjxdi3zwpsarp72dkq7p3aufgi4
==> No binary for boost-1.54.0-dsxq7qjxdi3zwpsarp72dkq7p3aufgi4 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/04/047e927de336af106a24bceba30069980c191529fd76b8dff8eb9a328b48ae1d.tar.bz2
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/boost/clang-linux_add_option2.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./b2' 'install' 'threading=multi' '-j' '16' '--user-config=/tmp/r0007/spack-stage/spack-stage-boost-1.54.0-dsxq7qjxdi3zwpsarp72dkq7p3aufgi4/spack-src/user-config.jam' 'variant=release' '-s' 'BZIP2_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/include' '-s' 'BZIP2_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg/lib' '-s' 'ZLIB_INCLUDE=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/include' '-s' 'ZLIB_LIBPATH=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt/lib' '-s' 'NO_LZMA=1' '-s' 'NO_ZSTD=1' 'link=static,shared' '--layout=system' 'toolset=clang'

2 errors found in build log:
176 common.mkdir bin.v2/libs/thread/build/clang-linux-20.1/release/link-static/threading-multi/pthread
177 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src
178 common.mkdir bin.v2/libs/log/build/clang-linux-20.1/release/build-no/link-static/log-api-unix
179 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src/tr1
180 common.mkdir bin.v2/libs/log/build/clang-linux-20.1/release/build-no/link-static/log-api-unix/threading-mul
ti
181 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../
src/tr1/pch.hpp.pth
>> 182 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
183
184 rm -f "bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi/../src/tr1/pch.hpp.pth
" && "/fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++" -c -x c++-header -O3 -finline-funct
ions -Wno-inline -Wall -pthread -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -DNDEBUG -I"." -I"libs/math
/src/tr1" -Xclang -emit-pth -o "bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi
/../src/tr1/pch.hpp.pth" "libs/math/build/../src/tr1/pch.hpp"
185
186 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading
-multi/../src/tr1/pch.hpp.pth...
187 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi>assoc_laguerre.o f
or lack of <pbin.v2/libs/math/build/clang-linux-20.1/release/link-static/threading-multi>../src/tr1/pch.hpp
.pth...
188 ...on 100th target...

...

57449 7 warnings generated.
57450 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi
57451 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/..
57452 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src
57453 common.mkdir bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1
57454 clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1/pch.
hpp.pth
>> 57455 error: unknown argument '-emit-pth'; did you mean '-emit-pch'?
57456
57457 rm -f "bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../src/tr1/pch.hpp.pth" && "/fefs/
home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++" -c -x c++-header -O3 -finline-functions -Wno-in
line -Wall -pthread -fPIC -DBOOST_ALL_NO_LIB=1 -DBOOST_BUILD_PCH_ENABLED -DBOOST_MATH_TR1_DYN_LINK=1 -DNDE
BUG -I"." -I"libs/math/src/tr1" -Xclang -emit-pth -o "bin.v2/libs/math/build/clang-linux-20.1/release/threa
ding-multi/../src/tr1/pch.hpp.pth" "libs/math/build/../src/tr1/pch.hpp"
57458
57459 ...failed clang-linux.compile.c++.pch bin.v2/libs/math/build/clang-linux-20.1/release/threading-multi/../sr
c/tr1/pch.hpp.pth...
57460 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>assoc_laguerre.o for lack of <
pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>../src/tr1/pch.hpp.pth...
57461 ...skipped <pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>assoc_legendre.o for lack of <
pbin.v2/libs/math/build/clang-linux-20.1/release/threading-multi>../src/tr1/pch.hpp.pth...

See build log for details:
/tmp/r0007/spack-stage/spack-stage-boost-1.54.0-dsxq7qjxdi3zwpsarp72dkq7p3aufgi4/spack-build-out.txt

==> Installing gettext-0.21-a45ovqgpwfv7ojn2wpmceas7brhe4aq5
==> No binary for gettext-0.21-a45ovqgpwfv7ojn2wpmceas7brhe4aq5 found: installing from source
==> Warning: Skipping build of bcl2fastq2-2.20.0.422-lw2bq5n7r3f772jj2i6llojdcu6koqqu since boost-1.54.0-dsxq7qjxdi3zwpsarp72dkq7p3aufgi4 failed
==> Using cached archive: /fefs/home/r0007/all-test/arm/spack/var/spack/cache/_source-cache/archive/d2/d20fcbb537e02dcf1383197ba05bd0734ef7bf5db06bdb241eb69b7d16b73192.tar.xz
==> No patches needed for gettext
==> gettext: Executing phase: 'autoreconf'
==> gettext: Executing phase: 'configure'
==> gettext: Executing phase: 'build'
==> gettext: Executing phase: 'install'
==> gettext: Successfully installed gettext-0.21-a45ovqgpwfv7ojn2wpmceas7brhe4aq5
Fetch: 0.02s. Build: 7m 3.19s. Total: 7m 3.22s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gettext-0.21-a45ovqgpwfv7ojn2wpmceas7brhe4aq5
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/autoconf-2.69-j4a5oxd7x52krlrb6cltlojgfxayltdb
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/automake-1.16.3-24iiwsst3ag43rfhulzcbplwlll7jlqv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/cmake-3.19.5-vghzo7zxlg4jrcbfymnms7oagwheeqyi
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gmp-6.1.2-guaa45ujapgqyvstaaw2hvi6funykilo
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/mpfr-4.0.2-wab6vjlpjq5bsnknl63at5l4zjnawgzl
==> Installing gawk-5.1.0-oz66jdhn3kr3j23t774tmbwqskdky4ir
==> No binary for gawk-5.1.0-oz66jdhn3kr3j23t774tmbwqskdky4ir found: installing from source
==> Using cached archive: /fefs/home/r0007/all-test/arm/spack/var/spack/cache/_source-cache/archive/cf/cf5fea4ac5665fd5171af4716baab2effc76306a9572988d5ba1078f196382bd.tar.xz
==> No patches needed for gawk
==> gawk: Executing phase: 'autoreconf'
==> gawk: Executing phase: 'configure'
==> gawk: Executing phase: 'build'
==> gawk: Executing phase: 'install'
==> gawk: Successfully installed gawk-5.1.0-oz66jdhn3kr3j23t774tmbwqskdky4ir
Fetch: 0.01s. Build: 40.10s. Total: 40.12s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gawk-5.1.0-oz66jdhn3kr3j23t774tmbwqskdky4ir
==> Error: bcl2fastq2-2.20.0.422-lw2bq5n7r3f772jj2i6llojdcu6koqqu: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libgpg-error-1.37-ssk6rkzf6zkp36n3klrlalo452gxlvaq
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libgcrypt-1.9.1-be3aoea3ouvbqcgzz3kcy22vemhs3sdd


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