List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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biobloom 2.2.0

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sparsehash-2.0.3-ufle4zpnkkur7gfmm4wz2et3ur6rnwrs
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/tar-1.32-5r2igeglgmgqoin544y3mgcv2yhofa76
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.75.0-sr7b2totd4pq74rb76nkdwomdqvb4alj
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/cmake-3.19.5-vghzo7zxlg4jrcbfymnms7oagwheeqyi
==> Installing sdsl-lite-2.1.1-w45nggipxseghffcsp7vgwnxu2zjloc6
==> No binary for sdsl-lite-2.1.1-w45nggipxseghffcsp7vgwnxu2zjloc6 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/2f/2f192977b47406ae8992292c7e841ef23d4656bf72f6140540bed53af68e06ed
==> No patches needed for sdsl-lite
==> sdsl-lite: Executing phase: 'install'
==> sdsl-lite: Successfully installed sdsl-lite-2.1.1-w45nggipxseghffcsp7vgwnxu2zjloc6
Fetch: 0.25s. Build: 2m 3.57s. Total: 2m 3.81s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sdsl-lite-2.1.1-w45nggipxseghffcsp7vgwnxu2zjloc6
==> Installing biobloom-2.2.0-ap757reww7hml4gnza2zjsgqk7dswjg3
==> No binary for biobloom-2.2.0-ap757reww7hml4gnza2zjsgqk7dswjg3 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/5d/5d09f8690f0b6402f967ac09c5b0f769961f3fe3791000f8f73af6af7324f02c.tar.gz
==> No patches needed for biobloom
==> biobloom: Executing phase: 'autoreconf'
==> biobloom: Executing phase: 'configure'
==> biobloom: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

5 errors found in build log:
97 mv -f .deps/biobloommaker-BioBloomMaker.Tpo .deps/biobloommaker-BioBloomMaker.Po
98 mv -f .deps/biobloommaker-BloomFilterGenerator.Tpo .deps/biobloommaker-BloomFilterGenerator.Po
99 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -Wall -Wextra -Werror -fopenmp -w -fopenmp
-o biobloommaker biobloommaker-BioBloomMaker.o biobloommaker-BloomFilterGenerator.o ../Common/libcommon.a -l
z -lsdsl -ldl
100 mv -f .deps/biobloommimaker-BioBloomMIMaker.Tpo .deps/biobloommimaker-BioBloomMIMaker.Po
101 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -Wall -Wextra -Werror -fopenmp -w -fopenmp
-o biobloommimaker biobloommimaker-BioBloomMIMaker.o biobloommimaker-Options.o ../Common/libcommon.a -lz -ls
dsl -ldl
102 biobloommimaker-BioBloomMIMaker.o: In function `void MIBFGen::insertTillEnd<ntHashIterator>(MIBloomFilter<uns
igned short>&, unsigned int, ntHashIterator&, unsigned short)':
>> 103 BioBloomMIMaker.cpp:(.text._ZN7MIBFGen13insertTillEndI14ntHashIteratorEEvR13MIBloomFilterItEjRT_t[_ZN7MIBFGen
13insertTillEndI14ntHashIteratorEEvR13MIBloomFilterItEjRT_t]+0xc8): undefined reference to `__atomic_load'
>> 104 BioBloomMIMaker.cpp:(.text._ZN7MIBFGen13insertTillEndI14ntHashIteratorEEvR13MIBloomFilterItEjRT_t[_ZN7MIBFGen
13insertTillEndI14ntHashIteratorEEvR13MIBloomFilterItEjRT_t]+0x108): undefined reference to `__atomic_compare
_exchange'
105 biobloommimaker-BioBloomMIMaker.o: In function `void MIBFGen::insertTillEnd<stHashIterator>(MIBloomFilter<uns
igned short>&, unsigned int, stHashIterator&, unsigned short)':
>> 106 BioBloomMIMaker.cpp:(.text._ZN7MIBFGen13insertTillEndI14stHashIteratorEEvR13MIBloomFilterItEjRT_t[_ZN7MIBFGen
13insertTillEndI14stHashIteratorEEvR13MIBloomFilterItEjRT_t]+0xcc): undefined reference to `__atomic_load'
>> 107 BioBloomMIMaker.cpp:(.text._ZN7MIBFGen13insertTillEndI14stHashIteratorEEvR13MIBloomFilterItEjRT_t[_ZN7MIBFGen
13insertTillEndI14stHashIteratorEEvR13MIBloomFilterItEjRT_t]+0x10c): undefined reference to `__atomic_compare
_exchange'
>> 108 clang-9: error: linker command failed with exit code 1 (use -v to see invocation)
109 make[2]: *** [Makefile:390: biobloommimaker] Error 1
110 make[2]: Leaving directory '/tmp/r0007/spack-stage/spack-stage-biobloom-2.2.0-ap757reww7hml4gnza2zjsgqk7dswjg
3/spack-src/BioBloomMaker'
111 make[1]: *** [Makefile:426: all-recursive] Error 1
112 make[1]: Leaving directory '/tmp/r0007/spack-stage/spack-stage-biobloom-2.2.0-ap757reww7hml4gnza2zjsgqk7dswjg
3/spack-src'
113 make: *** [Makefile:346: all] Error 2

See build log for details:
/tmp/r0007/spack-stage/spack-stage-biobloom-2.2.0-ap757reww7hml4gnza2zjsgqk7dswjg3/spack-build-out.txt


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