List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bismark 0.19.0

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libbsd-0.10.0-exouu5k337ae2cwfpsj63xezz66q4kcp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/xz-5.2.5-g555znztsjyxwvh7ogp5tw2logq3ksnt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libffi-3.3-d4dvu2shhghn2qvhm3qofdemnaxdoach
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/util-linux-uuid-2.36-e2ex3jyztjovgxgekpbdzzdhbdubi2p5
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/tar-1.32-5r2igeglgmgqoin544y3mgcv2yhofa76
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libunistring-0.9.10-i2tj2y52726ibfyzek6nz6nnrgs2autt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/expat-2.2.10-qetcbzinvlz7ljaaboysuh5ntjasoqix
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxml2-2.9.10-35gjpgzuiidtypf3wtngmxdv5qme2ltv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libidn2-2.3.0-2gyluopv2p6fxofacwoxzdjv6isgzdf4
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sqlite-3.34.0-r45twtdqww2kpsngzrnsu6aynq2emhhx
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gettext-0.21-btki6ot2jeadduuicep6svn3kpytngf3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/python-3.8.8-yqj3nu5q2nqgzakxdtanpoq3z5pi4bhe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/curl-7.74.0-fdqduntcgz2y723mhjbmpyajp6gm6e2x
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/cmake-3.19.5-vghzo7zxlg4jrcbfymnms7oagwheeqyi
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/py-setuptools-50.3.2-7jggag72wxyn4bbodlgerknodghtx2wk
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ninja-1.10.2-jnahd72yo5puuuae3qdookng72vapu7n
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/htslib-1.10.2-dzvwtimzwnjwjl36jnyufjadzpckzr42
==> Installing intel-tbb-2020.3-torlubornmfef4nzm4lcgzm3atypbdio
==> No binary for intel-tbb-2020.3-torlubornmfef4nzm4lcgzm3atypbdio found: installing from source
==> Using cached archive: /fefs/home/r0007/all-test/arm/spack/var/spack/cache/_source-cache/archive/eb/ebc4f6aa47972daed1f7bf71d100ae5bf6931c2e3144cf299c8cc7d041dca2f3.tar.gz
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/intel-tbb/tbb_cmakeConfig-2019.5.patch
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/intel-tbb/makefile-debug.patch
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/intel-tbb/macos-arm64.patch
==> intel-tbb: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'compiler=gcc'

32 errors found in build log:
17 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o spin_rw_mutex.o -c -MMD -DTBB_USE_DEBUG -O
0 -g -DUSE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized
-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include ../.
./src/tbb/spin_rw_mutex.cpp
18 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o x86_rtm_rw_mutex.o -c -MMD -DTBB_USE_DEBUG
-O0 -g -DUSE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-si
zed-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include .
./../src/tbb/x86_rtm_rw_mutex.cpp
19 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o spin_mutex.o -c -MMD -DTBB_USE_DEBUG -O0 -
g -DUSE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-de
allocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include ../../s
rc/tbb/spin_mutex.cpp
20 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o critical_section.o -c -MMD -DTBB_USE_DEBUG
-O0 -g -DUSE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-si
zed-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include .
./../src/tbb/critical_section.cpp
21 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o mutex.o -c -MMD -DTBB_USE_DEBUG -O0 -g -D
USE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-dealloc
ation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include ../../src/tb
b/mutex.cpp
22 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -o recursive_mutex.o -c -MMD -DTBB_USE_DEBUG
-O0 -g -DUSE_PTHREAD -pthread -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-siz
ed-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../../src -I../../src/rml/include -I../../include ..
/../src/tbb/recursive_mutex.cpp
>> 23 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 24 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 25 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 26 make[1]: *** [../../build/common_rules.inc:80: concurrent_vector.o] Error 1
27 make[1]: *** Waiting for unfinished jobs....
>> 28 make[1]: *** [../../build/common_rules.inc:80: spin_mutex.o] Error 1
>> 29 make[1]: *** [../../build/common_rules.inc:80: queuing_rw_mutex.o] Error 1
>> 30 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 31 make[1]: *** [../../build/common_rules.inc:80: pipeline.o] Error 1
>> 32 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 33 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 34 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 35 make[1]: *** [../../build/common_rules.inc:80: x86_rtm_rw_mutex.o] Error 1
>> 36 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 37 make[1]: *** [../../build/common_rules.inc:80: recursive_mutex.o] Error 1
>> 38 make[1]: *** [../../build/common_rules.inc:80: concurrent_hash_map.o] Error 1
>> 39 make[1]: *** [../../build/common_rules.inc:80: queuing_mutex.o] Error 1
>> 40 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 41 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 42 make[1]: *** [../../build/common_rules.inc:80: spin_rw_mutex.o] Error 1
>> 43 make[1]: *** [../../build/common_rules.inc:80: itt_notify.o] Error 1
>> 44 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 45 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 46 make[1]: *** [../../build/common_rules.inc:80: concurrent_queue.o] Error 1
>> 47 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 48 make[1]: *** [../../build/common_rules.inc:80: cache_aligned_allocator.o] Error 1
>> 49 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 50 make[1]: *** [../../build/common_rules.inc:80: dynamic_link.o] Error 1
>> 51 make[1]: *** [../../build/common_rules.inc:80: critical_section.o] Error 1
>> 52 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 53 make[1]: *** [../../build/common_rules.inc:80: reader_writer_lock.o] Error 1
>> 54 clang-9: error: unknown argument: '-flifetime-dse=1'
>> 55 make[1]: *** [../../build/common_rules.inc:80: mutex.o] Error 1
56 make[1]: Leaving directory '/tmp/r0007/spack-stage/spack-stage-intel-tbb-2020.3-torlubornmfef4nzm4lcgzm3atypbd
io/spack-src/build/linux_aarch64_gcc_cc8.3.1_libc2.28_kernel4.18.0_debug'
57 make: *** [Makefile:29: tbb] Error 2

See build log for details:
/tmp/r0007/spack-stage/spack-stage-intel-tbb-2020.3-torlubornmfef4nzm4lcgzm3atypbdio/spack-build-out.txt

[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/meson-0.57.1-t5fbjbplbrmjnrp7cbhte4njsvac3lrc
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/samtools-1.10-co4btayxxezkyf3ay4hluhvlbnmfwlhs
==> Installing simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq
==> No binary for simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq found: installing from source
==> Warning: Skipping build of bowtie2-2.4.2-a2woa2o3dkpmrmpo5w2qfl6r3v6kwnsc since intel-tbb-2020.3-torlubornmfef4nzm4lcgzm3atypbdio failed
==> Warning: Skipping build of bismark-0.19.0-2rjew3pvxqktwefi3snoaaiai2b6lilv since bowtie2-2.4.2-a2woa2o3dkpmrmpo5w2qfl6r3v6kwnsc failed
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/25/25a8b8c69c17ddc2f6209e86caa6b12d4ed91c0f841617efc56e5675eea84915.tar.gz
==> No patches needed for simde
==> simde: Executing phase: 'meson'
==> Error: ProcessError: Command exited with status 1:
'meson' '/tmp/r0007/spack-stage/spack-stage-simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq/spack-src' '--prefix=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq' '--libdir=/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq/lib' '--buildtype=release' '--strip'
See build log for details:
/tmp/r0007/spack-stage/spack-stage-simde-0.6.0-6corwlvzmsl3cuuvda3opfqqoncmillq/spack-build-out.txt

==> Error: bismark-0.19.0-2rjew3pvxqktwefi3snoaaiai2b6lilv: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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