List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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amp develop

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-mpi-head-zlunfezjmwzq5pfrxkeb3tpfc6ja5cxz)
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external perl-5.26.3-cfeod657avcbjzlstrxizeulrdfnqb3r)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external m4-1.4.18-zz6lq3qkexluljpiw5yxqyozzhkijvpn)
[+] /usr (external autoconf-2.69-me3qacnq6as2fvkhuiia2ks5udajax3b)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /usr (external libtool-2.4.6-snb3wjzerg4q7w57akrhqlg2hfvalawy)
[+] /usr (external readline-7.0-776innbqk3ca64hss3u4zvuh46f5xe4y)
[+] /usr (external hwloc-2.2.0-rmis2olps5il7dl7dva6guws6hdyyqjt)
==> Installing boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5
==> No binary for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 found: installing from source
==> Warning: Missing a source id for amp@develop
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/hypre-2.23.0-riw7dozzfgwt7ye7rana2557ia2vzzie
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/metis-5.1.0-pqv477hainor2647ipnnfdklix362kdx
==> Installing sundials-5.8.0-vgxgauqjgpntnzi57j3gv24zhgqkwxdd
==> No binary for sundials-5.8.0-vgxgauqjgpntnzi57j3gv24zhgqkwxdd found: installing from source
==> Warning: Skipping build of amp-develop-5bsjnl63qwxeuvmsupmknhotjq3emk3l since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Fetching https://mirror.spack.io/_source-cache/archive/d4/d4ed403351f72434d347df592da6c91a69452071860525385b3339c824e8a213.tar.gz
==> No patches needed for sundials
==> sundials: Executing phase: 'cmake'
==> sundials: Executing phase: 'build'
==> sundials: Executing phase: 'install'
==> sundials: Successfully installed sundials-5.8.0-vgxgauqjgpntnzi57j3gv24zhgqkwxdd
Fetch: 2.41s. Build: 15m 38.25s. Total: 15m 40.66s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sundials-5.8.0-vgxgauqjgpntnzi57j3gv24zhgqkwxdd
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/hdf5-1.10.7-e6qpgz6hrxhhxddnu4a2m6xxd4d5mawa
==> Installing trilinos-13.0.1-jwacd5argm3ctlqsmi5naj7h7f5lsrbl
==> No binary for trilinos-13.0.1-jwacd5argm3ctlqsmi5naj7h7f5lsrbl found: installing from source
==> No patches needed for trilinos
==> trilinos: Executing phase: 'cmake'
==> Error: NoLibrariesError: Unable to recursively locate hwloc libraries in /usr

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/trilinos/package.py:609, in cmake_args:
606 tpl_dep_map.append(('HWLOC', 'hwloc'))
607
608 for tpl_name, dep_name in tpl_dep_map:
>> 609 define_tpl(tpl_name, dep_name, dep_name in spec)
610
611 # MPI settings
612 options.append(define_tpl_enable('MPI'))

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-trilinos-13.0.1-jwacd5argm3ctlqsmi5naj7h7f5lsrbl/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/diffutils-3.8-c3z2qrsurl5l57yct4kuz2mxjyjywwgz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/parmetis-4.0.3-daapxkowlrnq3zrstoqvuip6wnetr7vh
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/netcdf-c-4.8.1-xugu2robxat3ke6ldkczj2yndffkaxck
==> Installing silo-4.10.2-g6ucd33crb4p53bpgyzvvfgkpvmy3c32
==> No binary for silo-4.10.2-g6ucd33crb4p53bpgyzvvfgkpvmy3c32 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/3a/3af87e5f0608a69849c00eb7c73b11f8422fa36903dd14610584506e7f68e638.tgz
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/silo/remove-mpiposix.patch
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/silo/H5FD_class_t-terminate.patch
==> silo: Executing phase: 'autoreconf'
==> silo: Executing phase: 'configure'
==> silo: Executing phase: 'build'
==> silo: Executing phase: 'install'
==> silo: Successfully installed silo-4.10.2-g6ucd33crb4p53bpgyzvvfgkpvmy3c32
Fetch: 1.75s. Build: 7m 46.59s. Total: 7m 48.34s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/silo-4.10.2-g6ucd33crb4p53bpgyzvvfgkpvmy3c32
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/superlu-dist-7.1.1-gcfkavrtr5hy72gbllv5tncorrpse54f
==> Installing petsc-3.16.1-ciz55dac245vv63t3seb6s53pocq5thm
==> No binary for petsc-3.16.1-ciz55dac245vv63t3seb6s53pocq5thm found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/90/909cf7bce7b6a0ddb2580a1ac9502aa01631ec4105c716594c1804f0ee1ea06a.tar.gz
==> No patches needed for petsc
==> petsc: Executing phase: 'install'
==> Error: NoLibrariesError: Unable to recursively locate fujitsu-ssl2 libraries in /opt/FJSVxtclanga/tcsds-latest

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/petsc/package.py:473, in install:
470 options.append(
471 '--with-{library}-lib={value}'.format(
472 library=petsclibname,
>> 473 value=spec[spacklibname].libs.joined())
474 )
475 else:
476 options.append(

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-petsc-3.16.1-ciz55dac245vv63t3seb6s53pocq5thm/spack-build-out.txt

==> Warning: Skipping build of libmesh-1.4.1-rvne3xskoua2nktmqfbsz4x2pcfm27hz since petsc-3.16.1-ciz55dac245vv63t3seb6s53pocq5thm failed
==> Error: amp-develop-5bsjnl63qwxeuvmsupmknhotjq3emk3l: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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