List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
Please contact us from email:

augustus 3.4.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/qhull-2020.2-rhjxlmj2sdddem4fxhtncdolfwzy6stl
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libjpeg-turbo-2.1.0-uocr25meow4yzjybzchavleirgndwx4i
==> Installing samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5
==> No binary for samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/6d/6da3770563b1c545ca8bdf78cf535e6d1753d6383983c7929245d5dba2902dcb.tar.bz2
==> No patches needed for samtools
==> samtools: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./configure' '--prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5' '--with-htslib=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/htslib-1.12-c5u36oarkl4rtix2agehpbjov64mwmhk' '--with-ncurses' 'CURSES_LIB=-lncursesw -ltinfow'

2 errors found in build log:
14 checking for C compiler warning flags... -Wall
15 checking for special C compiler options needed for large files... no
16 checking for _FILE_OFFSET_BITS value needed for large files... no
17 checking for htslib/sam.h... yes
18 checking for hts_version in -lhts... yes
19 checking for Curses library... no
>> 20 configure: error: curses development files not found
21
22 The 'samtools tview' command uses the curses text user interface lib
rary.
23 Building samtools with tview requires curses/ncurses/etc development
files
24 to be installed on the build machine; you may need to ensure a packa
ge such
25 as libncurses5-dev (on Debian or Ubuntu Linux) or ncurses-devel (on
RPM-based
26 Linux distributions) is installed.
27
>> 28 FAILED. Either configure --without-curses or resolve this error to
build
29 samtools successfully.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5/spack-build-out.txt

==> Installing py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf
==> No binary for py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/eb/eb5df6b9ab0af50fe1098a52fd439b04730b6e066887ff7497357b9ebd19f79b.tar.gz
==> No patches needed for py-pip
==> py-pip: Executing phase: 'build'
==> py-pip: Executing phase: 'install'
==> py-pip: Successfully installed py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf
Fetch: 1.21s. Build: 1m 18.98s. Total: 1m 20.19s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-certifi-2021.10.8-unokuqtcoh3uja5zbsqodlngvhkafqpu
==> Installing py-cppy-1.1.0-linzg2uz35ut7khvcm63bayt5nbqlr2e
==> No binary for py-cppy-1.1.0-linzg2uz35ut7khvcm63bayt5nbqlr2e found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/4e/4eda6f1952054a270f32dc11df7c5e24b259a09fddf7bfaa5f33df9fb4a29642.tar.gz
==> No patches needed for py-cppy
==> py-cppy: Executing phase: 'build'
==> py-cppy: Executing phase: 'install'
==> py-cppy: Successfully installed py-cppy-1.1.0-linzg2uz35ut7khvcm63bayt5nbqlr2e
Fetch: 0.66s. Build: 6.09s. Total: 6.75s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cppy-1.1.0-linzg2uz35ut7khvcm63bayt5nbqlr2e
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
==> Installing py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj
==> No binary for py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/1e/1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926.tar.gz
==> No patches needed for py-six
==> py-six: Executing phase: 'build'
==> py-six: Executing phase: 'install'
==> py-six: Successfully installed py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj
Fetch: 0.73s. Build: 5.98s. Total: 6.72s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj
==> Installing py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7
==> No binary for py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/c2/c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1.tar.gz
==> No patches needed for py-pyparsing
==> py-pyparsing: Executing phase: 'build'
==> py-pyparsing: Executing phase: 'install'
==> py-pyparsing: Successfully installed py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7
Fetch: 1.72s. Build: 10.82s. Total: 12.54s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7
==> Installing py-pillow-8.0.0-inksfdgdd6trpv2cilc2spyeneedxzt7
==> No binary for py-pillow-8.0.0-inksfdgdd6trpv2cilc2spyeneedxzt7 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/59/59304c67d12394815331eda95ec892bf54ad95e0aa7bc1ccd8e0a4a5a25d4bf3.tar.gz
==> Ran patch() for py-pillow
==> py-pillow: Executing phase: 'build_ext'
==> py-pillow: Executing phase: 'install'
==> py-pillow: Successfully installed py-pillow-8.0.0-inksfdgdd6trpv2cilc2spyeneedxzt7
Fetch: 3.48s. Build: 17m 21.76s. Total: 17m 25.24s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pillow-8.0.0-inksfdgdd6trpv2cilc2spyeneedxzt7
==> Installing py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr
==> No binary for py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/8d/8dd0e9524d6f386271a36b41dbf6c57d8e32fd96fd22b6584679dc569d20899f
==> No patches needed for py-tomli
==> py-tomli: Executing phase: 'install'
==> py-tomli: Successfully installed py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr
Fetch: 0.83s. Build: 11.98s. Total: 12.81s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr
==> Installing py-kiwisolver-1.3.2-ewoonffipal5ap3mcwl4lzxgajk66pvy
==> No binary for py-kiwisolver-1.3.2-ewoonffipal5ap3mcwl4lzxgajk66pvy found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc4453705b81d03568d5b808ad8f09c77c47534f6ac2e72e733f9ca4714aa75c.tar.gz
==> No patches needed for py-kiwisolver
==> py-kiwisolver: Executing phase: 'build'
==> py-kiwisolver: Executing phase: 'install'
==> py-kiwisolver: Successfully installed py-kiwisolver-1.3.2-ewoonffipal5ap3mcwl4lzxgajk66pvy
Fetch: 1.32s. Build: 2m 30.45s. Total: 2m 31.77s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-kiwisolver-1.3.2-ewoonffipal5ap3mcwl4lzxgajk66pvy
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

==> Installing py-cycler-0.10.0-iyssuq4lbtydqiwmax5gft7kl54vbthx
==> No binary for py-cycler-0.10.0-iyssuq4lbtydqiwmax5gft7kl54vbthx found: installing from source
==> Warning: Skipping build of py-matplotlib-3.4.3-5e2genfoboyc3seq62qdeapry6wbkksr since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Warning: Skipping build of bcftools-1.12-uw6ozt5oqlop3oovmrukn6tlqunaf7vg since py-matplotlib-3.4.3-5e2genfoboyc3seq62qdeapry6wbkksr failed
==> Fetching https://mirror.spack.io/_source-cache/archive/b6/b6d217635e03024196225367b1a438996dbbf0271bec488f00584f0e7dc15cfa.tar.gz
==> No patches needed for py-cycler
==> py-cycler: Executing phase: 'build'
==> py-cycler: Executing phase: 'install'
==> py-cycler: Successfully installed py-cycler-0.10.0-iyssuq4lbtydqiwmax5gft7kl54vbthx
Fetch: 0.91s. Build: 8.91s. Total: 9.82s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cycler-0.10.0-iyssuq4lbtydqiwmax5gft7kl54vbthx
==> Installing py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn
==> No binary for py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/7d/7dc96269f53a4ccec5c0670940a4281106dd0bb343f47b7471f779df49c2fbe7.tar.gz
==> No patches needed for py-packaging
==> py-packaging: Executing phase: 'build'
==> py-packaging: Executing phase: 'install'
==> py-packaging: Successfully installed py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn
Fetch: 1.43s. Build: 9.40s. Total: 10.83s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn
==> Installing py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt
==> No binary for py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/a4/a49aa8081eeb3514eb9728fa5040f2eaa962d6c6f4ec9c32f6c1fba88f88a0f2.tar.gz
==> No patches needed for py-setuptools-scm
==> py-setuptools-scm: Executing phase: 'build'
==> py-setuptools-scm: Executing phase: 'install'
==> py-setuptools-scm: Successfully installed py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt
Fetch: 0.75s. Build: 10.23s. Total: 10.97s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt
==> Installing py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv
==> No binary for py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/01/0123cacc1627ae19ddf3c27a5de5bd67ee4586fbdd6440d9748f8abb483d3e86.tar.gz
==> No patches needed for py-python-dateutil
==> py-python-dateutil: Executing phase: 'build'
==> py-python-dateutil: Executing phase: 'install'
==> py-python-dateutil: Successfully installed py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv
Fetch: 1.69s. Build: 15.64s. Total: 17.33s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv
==> Error: augustus-3.3.2-2tj6uq5y45jv2mqb2wcwzthz5nzceowg: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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