List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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bedtools2 2.30.0
| Compiler | Fujitsu Compiler 4.7.0 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
==> Installing bedtools2-2.30.0-igbklvxath7s747bluzj7pszb6r6x424
==> No binary for bedtools2-2.30.0-igbklvxath7s747bluzj7pszb6r6x424 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/c5/c575861ec746322961cd15d8c0b532bb2a19333f1cf167bbff73230a7d67302f.tar.gz
==> No patches needed for bedtools2
==> bedtools2: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bedtools2-2.30.0-igbklvxath7s747bluzj7pszb6r6x424' 'install'
1 error found in build log:
329 * compiling src/utils/driver/BedtoolsDriver.cpp
330 cd src/utils/htslib && make lib-static
331 make[1]: Entering directory '/vol0003/rccs-sdt/a01008/spack-stage/s
pack-stage-bedtools2-2.30.0-igbklvxath7s747bluzj7pszb6r6x424/spack-
src/src/utils/htslib'
332 gcc -g -Wall -O2 -I. -c -o kfunc.o kfunc.c
333 gcc -g -Wall -O2 -I. -c -o knetfile.o knetfile.c
334 - Creating executables for old CLI.
>> 335 Fatal Python error: Py_Initialize: Unable to get the locale encodin
g
336 ModuleNotFoundError: No module named 'encodings'
337
338 Current thread 0x0000400000045990 (most recent call first):
339 make: *** [Makefile:192: bin/intersectBed] Aborted
340 make: *** Waiting for unfinished jobs....
341 gcc -g -Wall -O2 -I. -c -o kstring.o kstring.c
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-bedtools2-2.30.0-igbklvxath7s747bluzj7pszb6r6x424/spack-build-out.txt
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