List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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motioncor2

Package

motioncor2

Description

MotionCor2 is a multi-GPU program that corrects beam-induced sample
motion recorded on dose fractionated movie stacks. It implements a
robust iterative alignment algorithm that delivers precise measurement
and correction of both global and non-uniform local motions at single
pixel level, suitable for both single-particle and tomographic images.
MotionCor2 is sufficiently fast to keep up with automated data
collection.

Note


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