List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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perl-star-fusion

Package

perl-star-fusion

Description

STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis
Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate
fusion transcripts supported by Illumina reads. STAR-Fusion further
processes the output generated by the STAR aligner to map junction reads
and spanning reads to a reference annotation set.

Note

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