List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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breakdancer
Package
breakdancer
Description
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that
provides genome-wide detection of structural variants from next
generation paired-end sequencing reads. It includes two complementary
programs. BreakDancerMax predicts five types of structural variants:
insertions, deletions, inversions, inter- and intra-chromosomal
translocations from next-generation short paired-end sequencing reads
using read pairs that are mapped with unexpected separation distances or
orientation. BreakDancerMini focuses on detecting small indels (usually
between 10bp and 100bp) using normally mapped read pairs..
Note
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