List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-abaenrichment
Package
r-abaenrichment
Description
Gene expression enrichment in human brain regions. The package
ABAEnrichment is designed to test for enrichment of user defined
candidate genes in the set of expressed genes in different human brain
regions. The core function 'aba_enrich' integrates the expression of the
candidate gene set (averaged across donors) and the structural
information of the brain using an ontology, both provided by the Allen
Brain Atlas project. 'aba_enrich' interfaces the ontology enrichment
software FUNC to perform the statistical analyses. Additional functions
provided in this package like 'get_expression' and 'plot_expression'
facilitate exploring the expression data, and besides the standard
candidate vs. background gene set enrichment, also three additional
tests are implemented, e.g. for cases when genes are ranked instead of
divided into candidate and background.
Note
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