List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-annotationhub

Package

r-annotationhub

Description

Client to access AnnotationHub resources. This package provides a client
for the Bioconductor AnnotationHub web resource. The AnnotationHub web
resource provides a central location where genomic files (e.g., VCF,
bed, wig) and other resources from standard locations (e.g., UCSC,
Ensembl) can be discovered. The resource includes metadata about each
resource, e.g., a textual description, tags, and date of modification.
The client creates and manages a local cache of files retrieved by the
user, helping with quick and reproducible access.

Note


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