List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-biomformat
Package
r-biomformat
Description
An interface package for the BIOM file format. This is an R package for
interfacing with the BIOM format. This package includes basic tools for
reading biom-format files, accessing and subsetting data tables from a
biom object (which is more complex than a single table), as well as
limited support for writing a biom-object back to a biom-format file.
The design of this API is intended to match the python API and other
tools included with the biom-format project, but with a decidedly "R
flavor" that should be familiar to R users. This includes S4 classes and
methods, as well as extensions of common core functions/methods.
Note
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