List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-gdsfmt
Package
r-gdsfmt
Description
R Interface to CoreArray Genomic Data Structure (GDS) Files. This
package provides a high-level R interface to CoreArray Genomic Data
Structure (GDS) data files, which are portable across platforms with
hierarchical structure to store multiple scalable array-oriented data
sets with metadata information. It is suited for large-scale datasets,
especially for data which are much larger than the available random-
access memory. The gdsfmt package offers the efficient operations
specifically designed for integers of less than 8 bits, since a diploid
genotype, like single-nucleotide polymorphism (SNP), usually occupies
fewer bits than a byte. Data compression and decompression are available
with relatively efficient random access. It is also allowed to read a
GDS file in parallel with multiple R processes supported by the package
parallel.
Note
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