List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-genomicfeatures
Package
r-genomicfeatures
Description
Conveniently import and query gene models. A set of tools and methods
for making and manipulating transcript centric annotations. With these
tools the user can easily download the genomic locations of the
transcripts, exons and cds of a given organism, from either the UCSC
Genome Browser or a BioMart database (more sources will be supported in
the future). This information is then stored in a local database that
keeps track of the relationship between transcripts, exons, cds and
genes. Flexible methods are provided for extracting the desired features
in a convenient format.
Note
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