List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-genomicranges
Package
r-genomicranges
Description
Representation and manipulation of genomic intervals. The ability to
efficiently represent and manipulate genomic annotations and alignments
is playing a central role when it comes to analyzing high-throughput
sequencing data (a.k.a. NGS data). The GenomicRanges package defines
general purpose containers for storing and manipulating genomic
intervals and variables defined along a genome. More specialized
containers for representing and manipulating short alignments against a
reference genome, or a matrix-like summarization of an experiment, are
defined in the GenomicAlignments and SummarizedExperiment packages,
respectively. Both packages build on top of the GenomicRanges
infrastructure.
Note
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