List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-gtools

Package

r-gtools

Description

Various R Programming Tools. Functions to assist in R programming.
Including: [1] assist in developing, updating, and maintaining R and R
packages ('ask', 'checkRVersion', 'getDependencies', 'keywords',
'scat'); [2] calculate the logit and inverse logit transformations
('logit', 'inv.logit'); [3] test if a value is missing, empty or
contains only NA and NULL values ('invalid'); [4] manipulate R's .Last
function ('addLast'); [5] define macros ('defmacro'); [6] detect odd and
even integers ('odd', 'even'); [7] convert strings containing non-ASCII
characters (like single quotes) to plain ASCII ('ASCIIfy'); [8] perform
a binary search ('binsearch'); [9] sort strings containing both numeric
and character components ('mixedsort'); [10] create a factor variable
from the quantiles of a continuous variable ('quantcut'); [11] enumerate
permutations and combinations ('combinations', 'permutation'); [12]
calculate and convert between fold-change and log-ratio ('foldchange',
'logratio2foldchange', 'foldchange2logratio'); [13] calculate
probabilities and generate random numbers from Dirichlet distributions
('rdirichlet', 'ddirichlet'); [14] apply a function over adjacent
subsets of a vector ('running'); [15] modify the TCP_NODELAY ('de-
Nagle') flag for socket objects; [16] efficient 'rbind' of data frames,
even if the column names don't match ('smartbind'); [17] generate
significance stars from p-values ('stars.pval'); [18] convert characters
to/from ASCII codes;

Note


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