List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-mergemaid

Package

r-mergemaid

Description

Merge Maid. The functions in this R extension are intended for cross-
study comparison of gene expression array data. Required from the user
is gene expression matrices, their corresponding gene-id vectors and
other useful information, and they could be 'list','matrix', or
'ExpressionSet'. The main function is 'mergeExprs' which transforms the
input objects into data in the merged format, such that common genes in
different datasets can be easily found. And the function 'intcor'
calculate the correlation coefficients. Other functions use the output
from 'modelOutcome' to graphically display the results and cross-
validate associations of gene expression data with survival.

Note


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