List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-mzr

Package

r-mzr

Description

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass
spectrometry data). mzR provides a unified API to the common file
formats and parsers available for mass spectrometry data. It comes with
a wrapper for the ISB random access parser for mass spectrometry mzXML,
mzData and mzML files. The package contains the original code written by
the ISB, and a subset of the proteowizard library for mzML and
mzIdentML. The netCDF reading code has previously been used in XCMS.

Note

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