List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-popvar
Package
r-popvar
Description
Genomic Breeding Tools: Genetic Variance Prediction and Cross-
Validation. The main attribute of 'PopVar' is the prediction of genetic
variance in bi-parental populations, from which the package derives its
name. 'PopVar' contains a set of functions that use phenotypic and
genotypic data from a set of candidate parents to 1) predict the mean,
genetic variance, and superior progeny value of all, or a defined set of
pairwise bi-parental crosses, and 2) perform cross-validation to
estimate genome-wide prediction accuracy of multiple statistical models.
More details are available in Mohammadi, Tiede, and Smith (2015,
<doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is
included for reference and examples.
Note
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