List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-ptw

Package

r-ptw

Description

Parametric Time Warping. Parametric Time Warping aligns patterns, i.e.
it aims to put corresponding features at the same locations. The
algorithm searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples to the
same reference, or several samples to several references. One can choose
between calculating individual warpings, or one global warping for a set
of samples and one reference. Two optimization criteria are implemented:
RMS (Root Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported. A vignette for
the latter is contained in the inst/doc directory of the source package
- the vignette source can be found on the package github site.

Note

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