List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-seurat
Package
r-seurat
Description
Tools for Single Cell Genomics. A toolkit for quality control, analysis,
and exploration of single cell RNA sequencing data. 'Seurat' aims to
enable users to identify and interpret sources of heterogeneity from
single cell transcriptomic measurements, and to integrate diverse types
of single cell data. See Satija R, Farrell J, Gennert D, et al (2015)
<doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015)
<doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019)
<doi:10.1016/j.cell.2019.05.031> for more details.
Note
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