Package

trinity

Description

Trinity, developed at the Broad Institute and the Hebrew University of
Jerusalem, represents a novel method for the efficient and robust de
novo reconstruction of transcriptomes from RNA-seq data. Trinity
combines three independent software modules: Inchworm, Chrysalis, and
Butterfly, applied sequentially to process large volumes of RNA-seq
reads. Trinity partitions the sequence data into many individual de
Bruijn graphs, each representing the transcriptional complexity at a
given gene or locus, and then processes each graph independently to
extract full-length splicing isoforms and to tease apart transcripts
derived from paralogous genes.

Note