List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-gofuncr
Package
r-gofuncr
Description
Gene ontology enrichment using FUNC. GOfuncR performs a gene ontology
enrichment analysis based on the ontology enrichment software FUNC. GO-
annotations are obtained from OrganismDb or OrgDb packages
('Homo.sapiens' by default); the GO-graph is included in the package and
updated regularly (27-Mar-2019). GOfuncR provides the standard candidate
vs. background enrichment analysis using the hypergeometric test, as
well as three additional tests: (i) the Wilcoxon rank-sum test that is
used when genes are ranked, (ii) a binomial test that is used when genes
are associated with two counts and (iii) a Chi-square or Fisher's exact
test that is used in cases when genes are associated with four counts.
To correct for multiple testing and interdependency of the tests,
family-wise error rates are computed based on random permutations of the
gene-associated variables. GOfuncR also provides tools for exploring the
ontology graph and the annotations, and options to take gene-length or
spatial clustering of genes into account. It is also possible to provide
custom gene coordinates, annotations and ontologies.
Note
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