List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-ldheatmap

Package

r-ldheatmap

Description

Graphical Display of Pairwise Linkage Disequilibria Between SNPs.
Produces a graphical display, as a heat map, of measures of pairwise
linkage disequilibria between single nucleotide polymorphisms (SNPs).
Users may optionally include the physical locations or genetic map
distances of each SNP on the plot. The methods are described in Shin et
al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the
imported package 'snpStats' and the suggested packages 'rtracklayer',
'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor
packages <https://bioconductor.org>.

Note

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