List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-tximport
Package
r-tximport
Description
Import and summarize transcript-level estimates for transcript- and
gene-level analysis. Imports transcript-level abundance, estimated
counts and transcript lengths, and summarizes into matrices for use with
downstream gene-level analysis packages. Average transcript length,
weighted by sample- specific transcript abundance estimates, is provided
as a matrix which can be used as an offset for different expression of
gene-level counts.
Note
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