List of Open Source Software which can be built on Fugaku
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Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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r-codex
Package
r-codex
Description
A Normalization and Copy Number Variation Detection Method for Whole
Exome Sequencing. A normalization and copy number variation calling
procedure for whole exome DNA sequencing data. CODEX relies on the
availability of multiple samples processed using the same sequencing
pipeline for normalization, and does not require matched controls. The
normalization model in CODEX includes terms that specifically remove
biases due to GC content, exon length and targeting and amplification
efficiency, and latent systemic artifacts. CODEX also includes a Poisson
likelihood-based recursive segmentation procedure that explicitly models
the count-based exome sequencing data.
Note
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