List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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reditools

Package

reditools

Description

REDItools: python scripts for RNA editing detection by RNA-Seq data.
REDItools are simple python scripts conceived to facilitate the
investigation of RNA editing at large-scale and devoted to research
groups that would to explore such phenomenon in own data but don't have
sufficient bioinformatics skills. They work on main operating systems
(although unix/linux-based OS are preferred), can handle reads from
whatever platform in the standard BAM format and implement a variety of
filters.

Note


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