List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-dexseq

Package

r-dexseq

Description

Inference of differential exon usage in RNA-Seq. The package is focused
on finding differential exon usage using RNA-seq exon counts between
samples with different experimental designs. It provides functions that
allows the user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the variance
between biological replicates and generalized linear models for testing.
The package also provides functions for the visualization and
exploration of the results.

Note


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