List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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r-mr-raps

Package

r-mr-raps

Description

Two Sample Mendelian Randomization using Robust Adjusted Profile Score.
Mendelian randomization is a method of identifying and estimating a
confounded causal effect using genetic instrumental variables. This
packages implements methods for two-sample Mendelian randomization with
summary statistics by using Robust Adjusted Profile Score (RAPS).
References: Qingyuan Zhao, Jingshu Wang, Jack Bowden, Dylan S. Small.
Statistical inference in two-sample summary-data Mendelian randomization
using robust adjusted profile score. <arXiv:1801.09652>.

Note

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