List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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amber 18.20

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libiconv-1.16-rveg745oel7pthzqe7iyusrxozpfhzha
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/pkgconf-1.7.3-e7n3ibmo3qglloicw627euk3653lj7dy
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/xz-5.2.5-nbhstuvzbff45w4irf5d63bwnoaydl5l
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/berkeley-db-18.1.40-bcpbh3jxr5snfw5botpbzrncua2jgxtk
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libsigsegv-2.12-7mdbq7aymwdyer55kqxtwkmabrqfrjio
==> fujitsu-mpi@4.3.1 : has external module in ['lang/tcsds-1.2.30a']
[+] /opt/FJSVxtclanga/tcsds-1.2.30a (external fujitsu-mpi-4.3.1-uzvxr3eqtfulyujbjs4xxt5t3fka76rl)
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/tar-1.32-4tib3w4bufsp5rmh77dedae6yqrfnztu
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/diffutils-3.7-4tdgwdjkarwx76hsznr273ee5knouaav
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/ncurses-6.2-3cvcdzzqxzuywrbb3fgurgwja7neml6e
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libxml2-2.9.10-cxwfsnmjxdlc3yylykvohwacbifuuo4b
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/m4-1.4.18-higyfcycqmi77nsmij4ttoph4decqvjg
==> Installing hdf5-1.10.7-gonhjogtzhqm7dwqtuzgxrywh3r2uc7i
==> No binary for hdf5-1.10.7-gonhjogtzhqm7dwqtuzgxrywh3r2uc7i found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Using cached archive: /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/cache/_source-cache/archive/7a/7a1a0a54371275ce2dfc5cd093775bb025c365846512961e7e5ceaecb437ef15.tar.gz
==> Ran patch() for hdf5
==> hdf5: Executing phase: 'autoreconf'
==> hdf5: Executing phase: 'configure'
==> hdf5: Executing phase: 'build'
==> hdf5: Executing phase: 'install'
==> hdf5: Successfully installed hdf5-1.10.7-gonhjogtzhqm7dwqtuzgxrywh3r2uc7i
Fetch: 0.13s. Build: 11m 29.11s. Total: 11m 29.24s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/hdf5-1.10.7-gonhjogtzhqm7dwqtuzgxrywh3r2uc7i
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/readline-8.0-x67xwcqnux4xmbj3b7oms47n5fup44e3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libtool-2.4.6-heralap5rbm3tgxvlguunwf4tk7jvcri
==> Installing netcdf-c-4.7.4-ptnolaok2jyb5zgojfnyoo3rax2kypnh
==> No binary for netcdf-c-4.7.4-ptnolaok2jyb5zgojfnyoo3rax2kypnh found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/0e/0e476f00aeed95af8771ff2727b7a15b2de353fb7bb3074a0d340b55c2bd4ea8.tar.gz
==> No patches needed for netcdf-c
==> netcdf-c: Executing phase: 'autoreconf'
==> netcdf-c: Executing phase: 'configure'
==> netcdf-c: Executing phase: 'build'
==> netcdf-c: Executing phase: 'install'
==> netcdf-c: Successfully installed netcdf-c-4.7.4-ptnolaok2jyb5zgojfnyoo3rax2kypnh
Fetch: 2.69s. Build: 2m 47.69s. Total: 2m 50.38s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/netcdf-c-4.7.4-ptnolaok2jyb5zgojfnyoo3rax2kypnh
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gettext-0.21-7vwvgn6bx6ay6x55ts7wckfucyvtig76
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
==> Installing netcdf-fortran-4.5.3-wv7gdziup4jnso3xye7h7ucn52asopf3
==> No binary for netcdf-fortran-4.5.3-wv7gdziup4jnso3xye7h7ucn52asopf3 found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/12/123a5c6184336891e62cf2936b9f2d1c54e8dee299cfd9d2c1a1eb05dd668a74.tar.gz
==> No patches needed for netcdf-fortran
==> netcdf-fortran: Executing phase: 'autoreconf'
==> netcdf-fortran: Executing phase: 'configure'
==> netcdf-fortran: Executing phase: 'build'
==> netcdf-fortran: Executing phase: 'install'
==> netcdf-fortran: Successfully installed netcdf-fortran-4.5.3-wv7gdziup4jnso3xye7h7ucn52asopf3
Fetch: 0.32s. Build: 1m 39.15s. Total: 1m 39.47s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/netcdf-fortran-4.5.3-wv7gdziup4jnso3xye7h7ucn52asopf3
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/texinfo-6.5-rlasgr2h5c4ut226stz6hruafkv7k7t6
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/help2man-1.47.16-wwig3h6o3wa7xncdekbopx7axaidgu6u
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/autoconf-2.69-ou7nluauc5ehv42p3q56tvz4t746r4l7
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bison-3.7.4-7ji3gfszhyld4j3uf7pbylo4m6rtjfdj
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/automake-1.16.3-5gcjddw55bul6jjqn7sfepr3qfs4rmow
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/findutils-4.6.0-bltgzp74oqd75fbg4jbywy2seps574ur
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/flex-2.6.4-lngohg7wxi576z7n4tkqga2zxw5dcim7
==> Installing amber-18.20-eqoltfctttlptt52ko3cfm3vhktu7ksk
==> No binary for amber-18.20-eqoltfctttlptt52ko3cfm3vhktu7ksk found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Error: FetchError: Manual download is required for amber. Refer to http://ambermd.org/ for download instructions.

/vol0001/g9300001/u93001/all-test/fj/spack/lib/spack/spack/package.py:1360, in do_fetch:
1357
1358 self.stage.create()
1359 err_msg = None if not self.manual_download else self.download_instr
>> 1360 start_time = time.time()
1361 self.stage.fetch(mirror_only, err_msg=err_msg)
1362 self._fetch_time = time.time() - start_time
1363


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