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  • OpenJDK 11
  • Ruby 2.6.5 or later
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  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
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ampliconnoise 1.29

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> fujitsu-mpi@4.3.1 : has external module in ['lang/tcsds-1.2.30a']
[+] /opt/FJSVxtclanga/tcsds-1.2.30a (external fujitsu-mpi-4.3.1-uzvxr3eqtfulyujbjs4xxt5t3fka76rl)
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gsl-2.6-azy6laoxqk3pccodcff5p4jx7eqsy7b3
==> Installing ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb
==> No binary for ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/0b/0bf946806d77ecaf0994ad8ebf9a5e98ad33c809f6def5c9340a16c367918167.tar.gz
==> Applied patch /vol0001/g9300001/u93001/all-test/fj/spack/var/spack/repos/builtin/packages/ampliconnoise/Fix-return-type.patch
==> ampliconnoise: Executing phase: 'edit'
==> ampliconnoise: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

9 warnings found in build log:
>> 6 make[1]: warning: jobserver unavailable: using -j1. Add '+' to pare
nt make rule.
7 make[1]: Entering directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-
src/FCluster'
8 cc -O3 -c FCluster.c
>> 9 FCluster.c:223:1: warning: type specifier missing, defaults to 'int'
[-Wimplicit-int]
10 UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatri
x,int nN)
11 ^
>> 12 FCluster.c:230:13: warning: implicit declaration of function 'Update
MinCacheForRow' is invalid in C99 [-Wimplicit-function-declaration]
13 UpdateMinCacheForRow(asMin,i,aafDistMatrix);
14 ^
>> 15 FCluster.c:234:1: warning: control reaches end of non-void function
[-Wreturn-type]
16 };
17 ^
>> 18 FCluster.c:237:1: warning: type specifier missing, defaults to 'int'
[-Wimplicit-int]
19 UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix
)
20 ^
>> 21 FCluster.c:255:1: warning: control reaches end of non-void function
[-Wreturn-type]
22 };
23 ^
24 5 warnings generated.
25 linking...
26 cc -o FCluster FCluster.o -lm
27 make[1]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/spa
ck-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-s
rc/FCluster'
28 (cd FastaUnique && make)
>> 29 make[1]: warning: jobserver unavailable: using -j1. Add '+' to pare
nt make rule.
30 make[1]: Entering directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-
src/FastaUnique'
31 cc -O3 -c FastaUnique.c
>> 32 FastaUnique.c:64:17: warning: using the result of an assignment as a
condition without parentheses [-Wparentheses]
33 while(szRet = fgets(szLine, MAX_LINE_LENGTH, ifp)){
34 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
35 FastaUnique.c:64:17: note: place parentheses around the assignment t
o silence this warning
36 while(szRet = fgets(szLine, MAX_LINE_LENGTH, ifp)){
37 ^
38 ( )

...

42 ==
43 1 warning generated.
44 linking...
45 cc -o FastaUnique FastaUnique.o -lm
46 make[1]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/spa
ck-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-s
rc/FastaUnique'
47 (cd NDist && make)
>> 48 make[1]: warning: jobserver unavailable: using -j1. Add '+' to pare
nt make rule.
49 make[1]: Entering directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-
src/NDist'
50 mpicc -O3 -c NDist.c
51 make[1]: mpicc: Command not found
52 make[1]: *** [makefile:13: NDist.o] Error 127
53 make[1]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/spa
ck-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-s
rc/NDist'
54 make: *** [makefile:4: all] Error 2

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-ampliconnoise-1.29-eiptcm27rqr72gbxs3etyopjjq6rhmpb/spack-build-out.txt


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