List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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aspect 2.2.0

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==========================
>> 26 ***** WARNING: F77 (set to /vol0001/g9300001/u93001/all-test/fj/spa
ck/lib/spack/env/fj/frt) found in environment variables - ignoring
27 use ./configure F77=$F77 if you really want to
use that value ******
28 =====================================================
==========================
29
30 TESTING: checkEnvCompilers from config.setCompilers(/vol0001/g93000
01/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshfl
vqwkumqvou6q/spack-src/config/BuildSystem/config/setCompilers.py:19
44)
31 TESTING: checkMPICompilerOverride from config.setCompilers(/vol0001
/g9300001/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee
75fshflvqwkumqvou6q/spack-src/config/BuildSystem/config/setCompiler
s.py:1877)
32 TESTING: requireMpiLdPath from config.setCompilers(/vol0001/g930000
1/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflv
qwkumqvou6q/spack-src/config/BuildSystem/config/setCompilers.py:189
8)

...

244 TESTING: checkInclude from config.headers(/vol0001/g9300001/u93001/
spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwkumqvou
6q/spack-src/config/BuildSystem/config/headers.py:86)
245 TESTING: checkMPIDistro from config.packages.MPI(/vol0001/g9300001/
u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqw
kumqvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:553)
246 TESTING: configureMPI2 from config.packages.MPI(/vol0001/g9300001/u
93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwk
umqvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:328)
247 TESTING: configureMPI3 from config.packages.MPI(/vol0001/g9300001/u
93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwk
umqvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:373)
248 TESTING: configureMPIEXEC from config.packages.MPI(/vol0001/g930000
1/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflv
qwkumqvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:176
)
249 =================================================
==============================
>> 250 ***** WARNING: mpiexec may not work on your system due to network i
ssues.
251 Perhaps you have VPN running whose network
settings may not work with mpiexec or your network is misconfigured
252 =================================================
==============================
253
254 TESTING: configureMPITypes from config.packages.MPI(/vol0001/g93000
01/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshfl
vqwkumqvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:42
0)
255 TESTING: SGIMPICheck from config.packages.MPI(/vol0001/g9300001/u93
001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwkum
qvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:481)
256 TESTING: CxxMPICheck from config.packages.MPI(/vol0001/g9300001/u93
001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwkum
qvou6q/spack-src/config/BuildSystem/config/packages/MPI.py:491)

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-petsc-3.14.4-nqogugj5idsee75fshflvqwkumqvou6q/spack-build-out.txt

==> Installing symengine-0.6.0-dwbhrnmfs43z2klygkes4vag2x4sjeje
==> No binary for symengine-0.6.0-dwbhrnmfs43z2klygkes4vag2x4sjeje found: installing from source
==> Warning: Skipping build of slepc-3.14.2-q2gzpey2v7bdmfd3mi6jcj7aavuo7muz since petsc-3.14.4-nqogugj5idsee75fshflvqwkumqvou6q failed
==> Warning: Skipping build of dealii-9.2.0-r463ujxxyylzfadiyd2g4bhcpajzxn7u since slepc-3.14.2-q2gzpey2v7bdmfd3mi6jcj7aavuo7muz failed
==> Warning: Skipping build of aspect-2.2.0-kuykba5y7cz7bjebcogap64le6yfpagq since dealii-9.2.0-r463ujxxyylzfadiyd2g4bhcpajzxn7u failed
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/4d/4d2caa86c03eaaa8ed004084d02f87b5c51b6229f8ba70d161227e22d6302f0a.tar.gz
==> No patches needed for symengine
==> symengine: Executing phase: 'cmake'
==> symengine: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

17 errors found in build log:
278 fatal error: malformed or corrupted AST file: 'Corrupted AST file'
279 1 error generated.
280 1 error generated.
281 1 error generated.
282 1 error generated.
283 1 error generated.
>> 284 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:106: sy
mengine/CMakeFiles/symengine.dir/add.cpp.o] Error 1
285 make[2]: *** Waiting for unfinished jobs....
>> 286 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:148: sy
mengine/CMakeFiles/symengine.dir/complex_double.cpp.o] Error 1
>> 287 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:120: sy
mengine/CMakeFiles/symengine.dir/basic.cpp.o] Error 1
>> 288 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:246: sy
mengine/CMakeFiles/symengine.dir/diophantine.cpp.o] Error 1
>> 289 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:134: sy
mengine/CMakeFiles/symengine.dir/complex.cpp.o] Error 1
290 1 error generated.
291 1 error generated.
292 1 error generated.
>> 293 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:176: sy
mengine/CMakeFiles/symengine.dir/cse.cpp.o] Error 1
>> 294 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:288: sy
mengine/CMakeFiles/symengine.dir/expand.cpp.o] Error 1
>> 295 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:316: sy
mengine/CMakeFiles/symengine.dir/fields.cpp.o] Error 1
296 1 error generated.
297 1 error generated.
>> 298 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:232: sy
mengine/CMakeFiles/symengine.dir/dict.cpp.o] Error 1
>> 299 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:218: sy
mengine/CMakeFiles/symengine.dir/derivative.cpp.o] Error 1
300 1 error generated.
301 1 error generated.
>> 302 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:302: sy
mengine/CMakeFiles/symengine.dir/expression.cpp.o] Error 1
>> 303 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:162: sy
mengine/CMakeFiles/symengine.dir/constants.cpp.o] Error 1
304 1 error generated.
>> 305 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:274: sy
mengine/CMakeFiles/symengine.dir/eval_double.cpp.o] Error 1
306 1 error generated.
307 1 error generated.
>> 308 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:260: sy
mengine/CMakeFiles/symengine.dir/eval.cpp.o] Error 1
>> 309 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:204: sy
mengine/CMakeFiles/symengine.dir/dense_matrix.cpp.o] Error 1
310 1 error generated.
>> 311 make[2]: *** [symengine/CMakeFiles/symengine.dir/build.make:190: sy
mengine/CMakeFiles/symengine.dir/cwrapper.cpp.o] Error 1
312 make[2]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-symengine-0.6.0-dwbhrnmfs43z2klygkes4vag2x4sjeje/spack-bu
ild-dwbhrnm'
>> 313 make[1]: *** [CMakeFiles/Makefile2:227: symengine/CMakeFiles/symeng
ine.dir/all] Error 2
314 make[1]: Leaving directory '/vol0001/g9300001/u93001/spack-stage/sp
ack-stage-symengine-0.6.0-dwbhrnmfs43z2klygkes4vag2x4sjeje/spack-bu
ild-dwbhrnm'
315 make: *** [Makefile:163: all] Error 2

See build log for details:
/home/g9300001/u93001/spack-stage/spack-stage-symengine-0.6.0-dwbhrnmfs43z2klygkes4vag2x4sjeje/spack-build-out.txt

==> Installing trilinos-13.0.1-tvt3afudzmyvlycfpcz4rc42nrgirt66
==> No binary for trilinos-13.0.1-tvt3afudzmyvlycfpcz4rc42nrgirt66 found: installing from source
==> Warning: Missing a source id for fujitsu-mpi@4.3.1
==> No patches needed for trilinos
==> trilinos: Executing phase: 'cmake'
==> trilinos: Executing phase: 'build'
==> trilinos: Executing phase: 'install'
==> trilinos: Successfully installed trilinos-13.0.1-tvt3afudzmyvlycfpcz4rc42nrgirt66
Fetch: 21m 14.67s. Build: 1h 32m 1.20s. Total: 1h 53m 15.87s.
[+] /vol0001/g9300001/u93001/all-test/fj/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/trilinos-13.0.1-tvt3afudzmyvlycfpcz4rc42nrgirt66
==> Error: aspect-2.2.0-kuykba5y7cz7bjebcogap64le6yfpagq: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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