List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bcache 1.0.8

Compiler Fujitsu Compiler 4.4.0a
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libiconv-1.16-rveg745oel7pthzqe7iyusrxozpfhzha
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/pkgconf-1.7.3-e7n3ibmo3qglloicw627euk3653lj7dy
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/xz-5.2.5-nbhstuvzbff45w4irf5d63bwnoaydl5l
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/zlib-1.2.11-y27qgb4znlcsleon2lxlxsng52nd4rzj
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libbsd-0.10.0-qeelvlo7c4g7yzbkpjjuvkwidjkb63fc
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libffi-3.3-k3dm6wbwvbt66d2dabx3xwi23jhkwf64
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/berkeley-db-18.1.40-bcpbh3jxr5snfw5botpbzrncua2jgxtk
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/tar-1.32-4tib3w4bufsp5rmh77dedae6yqrfnztu
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/diffutils-3.7-4tdgwdjkarwx76hsznr273ee5knouaav
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/ncurses-6.2-3cvcdzzqxzuywrbb3fgurgwja7neml6e
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/util-linux-uuid-2.36-ph2w2yfbflydnufbyevsnljjmg576a22
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/libxml2-2.9.10-cxwfsnmjxdlc3yylykvohwacbifuuo4b
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/expat-2.2.10-ziohulkd3v5nlpgoikmhdsuvpwoldk5q
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/bzip2-1.0.8-fpw7smnssbalg5kr3ekc2bypkyadczd6
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/readline-8.0-x67xwcqnux4xmbj3b7oms47n5fup44e3
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gettext-0.21-7vwvgn6bx6ay6x55ts7wckfucyvtig76
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/gdbm-1.18.1-gc7q4o3p6frzkxzisvr2j44kljoktzjm
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/sqlite-3.34.0-u7kilxrpewq53ou4yb45ztf5dvzjcko4
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/perl-5.32.1-zxtqmyvx2crwpk7xxpfk5eu5ntxspszz
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/openssl-1.1.1j-de77zldhh5cmb3lcdens3lo2j5mypejs
[+] /home/users/ea01/ea0108/all-test/fugaku/spack/opt/spack/linux-rhel8-a64fx/fj-4.4.0a/python-3.8.8-h5xhvod2elsogcd3cj3ve2tfj6di5352
==> Installing util-linux-2.36-rvnzkrcoz4h4ykr2gus63w5xgl767id5
==> No binary for util-linux-2.36-rvnzkrcoz4h4ykr2gus63w5xgl767id5 found: installing from source
==> Using cached archive: /home/users/ea01/ea0108/all-test/fugaku/spack/var/spack/cache/_source-cache/archive/82/82942cd877a989f6d12d4ce2c757fb67ec53d8c5cd9af0537141ec5f84a2eea3.tar.gz
==> No patches needed for util-linux
==> util-linux: Executing phase: 'autoreconf'
==> util-linux: Executing phase: 'configure'
==> util-linux: Executing phase: 'build'
==> util-linux: Executing phase: 'install'
==> Warning: Module file already exists : skipping creation
file : /home/users/ea01/ea0108/all-test/fugaku/spack/share/spack/modules/linux-rhel8-a64fx/util-linux-2.36-fj-4.4.0a-rvnzkrc
spec : util-linux@2.36%fj@4.4.0a~bash arch=linux-rhel8-a64fx ^berkeley-db@18.1.40%fj@4.4.0a~docs patches=b231fcc4d5cff05e5c3a4814f6a5af0e9a966428dc2176540d2c05aff41de522 arch=linux-rhel8-a64fx ^bzip2@1.0.8%fj@4.4.0a+shared arch=linux-rhel8-a64fx ^diffutils@3.7%fj@4.4.0a arch=linux-rhel8-a64fx ^expat@2.2.10%fj@4.4.0a+libbsd arch=linux-rhel8-a64fx ^gdbm@1.18.1%fj@4.4.0a arch=linux-rhel8-a64fx ^gettext@0.21%fj@4.4.0a+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel8-a64fx ^libbsd@0.10.0%fj@4.4.0a arch=linux-rhel8-a64fx ^libffi@3.3%fj@4.4.0a patches=26f26c6f29a7ce9bf370ad3ab2610f99365b4bdd7b82e7c31df41a3370d685c0 arch=linux-rhel8-a64fx ^libiconv@1.16%fj@4.4.0a arch=linux-rhel8-a64fx ^libxml2@2.9.10%fj@4.4.0a~python arch=linux-rhel8-a64fx ^ncurses@6.2%fj@4.4.0a~symlinks+termlib arch=linux-rhel8-a64fx ^openssl@1.1.1j%fj@4.4.0a+systemcerts arch=linux-rhel8-a64fx ^perl@5.32.1%fj@4.4.0a+cpanm+shared+threads arch=linux-rhel8-a64fx ^pkgconf@1.7.3%fj@4.4.0a arch=linux-rhel8-a64fx ^python@3.8.8%fj@4.4.0a+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,2e23826e22e7da18a38b00dccef72dfea9406b2de930d5d135eca91e6cc98346 arch=linux-rhel8-a64fx ^readline@8.0%fj@4.4.0a arch=linux-rhel8-a64fx ^sqlite@3.34.0%fj@4.4.0a+column_metadata+fts~functions~rtree arch=linux-rhel8-a64fx ^tar@1.32%fj@4.4.0a arch=linux-rhel8-a64fx ^util-linux-uuid@2.36%fj@4.4.0a arch=linux-rhel8-a64fx ^xz@5.2.5%fj@4.4.0a~pic arch=linux-rhel8-a64fx ^zlib@1.2.11%fj@4.4.0a+optimize+pic+shared arch=linux-rhel8-a64fx
==> Error: InvalidPermissionsError: Attempting to set suid with group writable

/home/users/ea01/ea0108/all-test/fugaku/spack/lib/spack/spack/build_environment.py:872, in _setup_pkg_and_run:
869 tb_string = traceback.format_exc()
870
871 # build up some context from the offending package so we can
>> 872 # show that, too.
873 package_context = get_package_context(tb)
874
875 logfile = None

See build log for details:
/tmp/ea0108/spack-stage/spack-stage-util-linux-2.36-rvnzkrcoz4h4ykr2gus63w5xgl767id5/spack-build-out.txt

==> Warning: Skipping build of bcache-1.0.8-kxxrvz4wbipfhc7mghqxqjdwin2u4lju since util-linux-2.36-rvnzkrcoz4h4ykr2gus63w5xgl767id5 failed
==> Error: bcache-1.0.8-kxxrvz4wbipfhc7mghqxqjdwin2u4lju: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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