List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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abinit 8.10.3

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libsigsegv-2.12-qplpwsrxudbdb2ob3ecjlptzd5vvh7oe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/util-macros-1.19.1-torrncqsc6nwyvd75bywsuvendskowec
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/xz-5.2.5-g555znztsjyxwvh7ogp5tw2logq3ksnt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/m4-1.4.18-jk4zefridpuwa4jhmesx73litjev7zjw
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxml2-2.9.10-35gjpgzuiidtypf3wtngmxdv5qme2ltv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libtool-2.4.6-g46uuv7kjhn24vxxut7m5ct7gnux25tt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libpciaccess-0.16-us4aoycgbsbwbbidtf77wndd67oj7vwa
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/hwloc-2.4.1-zeckrjz7pngjrqtowpfihdestrp5vyyi
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
==> Installing libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77
==> No binary for libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77 found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/6c/6ca1d0bb5fdc341d59960707bc67f23ad54de8a6018e19e02eee2b16ea7cc642.tar.gz
==> No patches needed for libxc
==> libxc: Executing phase: 'autoreconf'
==> libxc: Executing phase: 'configure'
==> libxc: Executing phase: 'build'
==> libxc: Executing phase: 'install'
==> libxc: Successfully installed libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77
Fetch: 0.13s. Build: 17.05s. Total: 17.18s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/autoconf-2.69-j4a5oxd7x52krlrb6cltlojgfxayltdb
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openblas-0.3.13-qc2t72346rgcgfn3b7b3mdzjjeljsfu2
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/automake-1.16.3-24iiwsst3ag43rfhulzcbplwlll7jlqv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libevent-2.1.12-wx6szbwgk3vvwacstqhejfawix23diit
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/numactl-2.0.14-pmxr6abyahe4mlfazt37qhv2iniiridp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openmpi-4.0.5-66bvxkbuwjcyn75pw2byl7dj4gml3czc
==> Installing fftw-3.3.9-fb5bsf6ux5sv57ttomah5zrrb6ugwbzs
==> No binary for fftw-3.3.9-fb5bsf6ux5sv57ttomah5zrrb6ugwbzs found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/bf/bf2c7ce40b04ae811af714deb512510cc2c17b9ab9d6ddcf49fe4487eea7af3d.tar.gz
==> Ran patch() for fftw
==> fftw: Executing phase: 'autoreconf'
==> fftw: Executing phase: 'configure'
==> fftw: Executing phase: 'build'
==> fftw: Executing phase: 'install'
==> fftw: Successfully installed fftw-3.3.9-fb5bsf6ux5sv57ttomah5zrrb6ugwbzs
Fetch: 0.17s. Build: 2m 53.72s. Total: 2m 53.89s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/fftw-3.3.9-fb5bsf6ux5sv57ttomah5zrrb6ugwbzs
==> Installing abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u
==> No binary for abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/ed/ed626424b4472b93256622fbb9c7645fa3ffb693d4b444b07d488771ea7eaa75.tar.gz
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/abinit/rm_march_settings.patch
==> abinit: Executing phase: 'autoreconf'
==> abinit: Executing phase: 'configure'
==> abinit: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

5 warnings found in build log:
148 SyntaxError: invalid syntax
149
150 checking for bzr... no
151 checking Python.h usability... no
152 checking Python.h presence... no
153 checking for Python.h... no
>> 154 configure: WARNING: your Python development environment is not working
155
156 ==============================================================================
157 === Libraries and linking ===
158 ==============================================================================
159
160 checking for ar... ar

...

368 checking xc_funcs.h usability... yes
369 checking xc_funcs.h presence... yes
370 checking for xc_funcs.h... yes
371 checking for Fortran module includes... none required
372 checking whether LibXC has Fortran support... yes
373 checking whether this is LibXC version 2.2->4.2... yes
>> 374 configure: WARNING: package: libxc - preq= - working=yes - incs=-I/fefs/home/r0007/all-test/arm/spack/opt/spack
/linux-rhel8-thunderx2/arm-20.1.0.15/libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77/include libs=-L/fefs/home/r00
07/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek7
7/lib -lxcf90 -lxc -lm
375 checking whether to select a fallback for atompaw... no
376 checking for atompaw... no
377 checking for graphatom... no
>> 378 configure: WARNING: package: atompaw - preq=yes - working=no - incs= libs=
>> 379 configure: WARNING: falling back to internal atompaw version
380 checking for the actual DFT support... libxc+atompaw-fallback
381 configure: fallbacks to enable => atompaw
382 checking whether to build atompaw... yes
383 checking whether to build bigdft... no
384 checking whether to build etsf_io... no
385 checking whether to build libxc... no

...

862 config.status: creating src/pkginfo.f90
863 config.status: creating config.h
864 config.status: executing depfiles commands
865 config.status: executing libtool commands
866 cd sources/atompaw-4.0.1.0 && make -j 1
867 make[4]: Entering directory '/tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u/
spack-src/fallbacks/sources/atompaw-4.0.1.0'
>> 868 make[4]: warning: -jN forced in submake: disabling jobserver mode.
869 make all-recursive
870 make[5]: Entering directory '/tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u/
spack-src/fallbacks/sources/atompaw-4.0.1.0'
871 Making all in src
872 make[6]: Entering directory '/tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u/
spack-src/fallbacks/sources/atompaw-4.0.1.0/src'
873 /bin/sh ../libtool --tag=CC --mode=compile /tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnid
ohmekn7vhpafw6u/spack-src/config/wrappers/wrap-mpicc -DHAVE_CONFIG_H -I. -I.. -I/fefs/home/r0007/all-test/arm
/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77/include -g -
O2 -MT libxc_tools.lo -MD -MP -MF .deps/libxc_tools.Tpo -c -o libxc_tools.lo libxc_tools.c
874 libtool: compile: /tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u/spack-src/
config/wrappers/wrap-mpicc -DHAVE_CONFIG_H -I. -I.. -I/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8
-thunderx2/arm-20.1.0.15/libxc-2.2.2-pr2rxp66yhl5cjdgqahnt64lrv6wek77/include -g -O2 -MT libxc_tools.lo -MD -MP
-MF .deps/libxc_tools.Tpo -c libxc_tools.c -o libxc_tools.o

See build log for details:
/tmp/r0007/spack-stage/spack-stage-abinit-8.10.3-e224hovzuhnwdqnidohmekn7vhpafw6u/spack-build-out.txt


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