List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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abyss 2.1.4

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libsigsegv-2.12-qplpwsrxudbdb2ob3ecjlptzd5vvh7oe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
==> Installing sse2neon-master-ytiqhsd4plhxp43tf6v7ysy3gcipegbe
==> No binary for sse2neon-master-ytiqhsd4plhxp43tf6v7ysy3gcipegbe found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Warning: Missing a source id for sse2neon@master
==> No patches needed for sse2neon
==> sse2neon: Executing phase: 'install'
==> sse2neon: Successfully installed sse2neon-master-ytiqhsd4plhxp43tf6v7ysy3gcipegbe
Fetch: 1.94s. Build: 0.29s. Total: 2.23s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sse2neon-master-ytiqhsd4plhxp43tf6v7ysy3gcipegbe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/util-macros-1.19.1-torrncqsc6nwyvd75bywsuvendskowec
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/xz-5.2.5-g555znztsjyxwvh7ogp5tw2logq3ksnt
==> Installing sparsehash-2.0.3-ufle4zpnkkur7gfmm4wz2et3ur6rnwrs
==> No binary for sparsehash-2.0.3-ufle4zpnkkur7gfmm4wz2et3ur6rnwrs found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/05/05e986a5c7327796dad742182b2d10805a8d4f511ad090da0490f146c1ff7a8c.tar.gz
==> No patches needed for sparsehash
==> sparsehash: Executing phase: 'autoreconf'
==> sparsehash: Executing phase: 'configure'
==> sparsehash: Executing phase: 'build'
==> sparsehash: Executing phase: 'install'
==> sparsehash: Successfully installed sparsehash-2.0.3-ufle4zpnkkur7gfmm4wz2et3ur6rnwrs
Fetch: 0.14s. Build: 2m 33.00s. Total: 2m 33.14s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sparsehash-2.0.3-ufle4zpnkkur7gfmm4wz2et3ur6rnwrs
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/m4-1.4.18-jk4zefridpuwa4jhmesx73litjev7zjw
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
==> Installing bwa-0.7.17-3sk537swpvd6g3igfivjm2u6mzphglut
==> No binary for bwa-0.7.17-3sk537swpvd6g3igfivjm2u6mzphglut found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/de/de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd.tar.bz2
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/bwa/bwa_for_aarch64.patch
==> bwa: Executing phase: 'install'
==> bwa: Successfully installed bwa-0.7.17-3sk537swpvd6g3igfivjm2u6mzphglut
Fetch: 0.12s. Build: 4.13s. Total: 4.26s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bwa-0.7.17-3sk537swpvd6g3igfivjm2u6mzphglut
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxml2-2.9.10-35gjpgzuiidtypf3wtngmxdv5qme2ltv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libtool-2.4.6-g46uuv7kjhn24vxxut7m5ct7gnux25tt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libpciaccess-0.16-us4aoycgbsbwbbidtf77wndd67oj7vwa
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/sqlite-3.34.0-r45twtdqww2kpsngzrnsu6aynq2emhhx
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.75.0-sr7b2totd4pq74rb76nkdwomdqvb4alj
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/hwloc-2.4.1-zeckrjz7pngjrqtowpfihdestrp5vyyi
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/autoconf-2.69-j4a5oxd7x52krlrb6cltlojgfxayltdb
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libevent-2.1.12-wx6szbwgk3vvwacstqhejfawix23diit
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/automake-1.16.3-24iiwsst3ag43rfhulzcbplwlll7jlqv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/numactl-2.0.14-pmxr6abyahe4mlfazt37qhv2iniiridp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openmpi-4.0.5-66bvxkbuwjcyn75pw2byl7dj4gml3czc
==> Installing abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy
==> No binary for abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy found: installing from source
==> Warning: Missing a source id for sse2neon@master
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/21/2145a1727556104d6a14db06a9c06f47b96c31cc5ac595ae9c92224349bdbcfc.tar.gz
==> Applied patch /fefs/home/r0007/all-test/arm/spack/var/spack/repos/builtin/packages/abyss/fix_BloomFilter.hpp.patch
==> abyss: Executing phase: 'autoreconf'
==> abyss: Executing phase: 'configure'
==> abyss: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
396 make[2]: Leaving directory '/tmp/r0007/spack-stage/spack-stage-abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy/spa
ck-src/Align'
397 Making all in ABYSS
398 make[2]: Entering directory '/tmp/r0007/spack-stage/spack-stage-abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy/sp
ack-src/ABYSS'
399 /fefs/home/r0007/all-test/arm/spack/lib/spack/env/arm/armclang++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/r0007/sp
ack-stage/spack-stage-abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy/spack-src -isystem/fefs/home/r0007/all-test/
arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.75.0-sr7b2totd4pq74rb76nkdwomdqvb4alj -isystem/
fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/boost-1.75.0-sr7b2totd4pq74rb7
6nkdwomdqvb4alj/include -isystem/fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.
15/openmpi-4.0.5-66bvxkbuwjcyn75pw2byl7dj4gml3czc/include -I/fefs/home/r0007/all-test/arm/spack/opt/spack/linux
-rhel8-thunderx2/arm-20.1.0.15/sqlite-3.34.0-r45twtdqww2kpsngzrnsu6aynq2emhhx/include -isystem/tmp/r0007/spac
k-stage/spack-stage-abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy/spack-src/boost_1_56_0 -Wall -Wextra -Werror -
g -O2 -MT ABYSS-abyss.o -MD -MP -MF .deps/ABYSS-abyss.Tpo -c -o ABYSS-abyss.o `test -f 'abyss.cc' || echo './'`
abyss.cc
400 In file included from abyss.cc:7:
401 In file included from ../Assembly/AssemblyAlgorithms.h:4:
>> 402 ../Assembly/BranchGroup.h:215:14: error: no function template matches function template specialization 'swap'
403 inline void swap(BranchGroup&, BranchGroup&) NOEXCEPT { assert(false); }
404 ^
405 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/move.h:205:5: note: candidate template ignor
ed: could not match 'type-parameter-0-0 [_Size]' against 'BranchGroup'
406 swap(_Tp (&__a)[_Nm], _Tp (&__b)[_Nm])
407 ^
408 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits/stl_pair.h:495:5: note: candidate template i
gnored: could not match 'pair<type-parameter-0-0, type-parameter-0-1>' against 'BranchGroup'

See build log for details:
/tmp/r0007/spack-stage/spack-stage-abyss-2.1.4-romveyfv3oobasxcxrrl5u7zemc5qhvy/spack-build-out.txt


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