List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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amber 18.20

Compiler Arm Compiler 20.1.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libiconv-1.16-rbvy3igiw4qft6btr7idktjwcaemxuhp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/pkgconf-1.7.3-pk3ut5wz7j4ljawbtap432vwutct6mfy
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/xz-5.2.5-g555znztsjyxwvh7ogp5tw2logq3ksnt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/zlib-1.2.11-zeiksrs3doa337233bumddsxos5wxakt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/berkeley-db-18.1.40-7bs4mlpnhts7qyvoovu6l7l2hi3jg4hm
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libsigsegv-2.12-qplpwsrxudbdb2ob3ecjlptzd5vvh7oe
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/util-macros-1.19.1-torrncqsc6nwyvd75bywsuvendskowec
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/tar-1.32-5r2igeglgmgqoin544y3mgcv2yhofa76
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/diffutils-3.7-v6lqzbd5unyulikx4y7jwlqip7dkwsjr
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/ncurses-6.2-fgvs4g67va2dmkhxgeiu4y3bsfw7y6md
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libxml2-2.9.10-35gjpgzuiidtypf3wtngmxdv5qme2ltv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/m4-1.4.18-jk4zefridpuwa4jhmesx73litjev7zjw
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bzip2-1.0.8-gzbk3k7pncrrwd3bx6ld7cqouwbakdjg
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/readline-8.0-ycr6pam52lcjficruvfaqfvr5v7uc3jl
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libtool-2.4.6-g46uuv7kjhn24vxxut7m5ct7gnux25tt
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gettext-0.21-btki6ot2jeadduuicep6svn3kpytngf3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/gdbm-1.18.1-fovuseo2dtl6viui5jdsgfbmum4d3r3r
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libpciaccess-0.16-us4aoycgbsbwbbidtf77wndd67oj7vwa
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/perl-5.32.1-twm7va7iclkgtp3qey3wfhbq5fczkoh3
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/hwloc-2.4.1-zeckrjz7pngjrqtowpfihdestrp5vyyi
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/texinfo-6.5-flmdxsov2ox7p2d4kxmssrxrx43jai57
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/help2man-1.47.16-wfwsbrlse4z2hcbu2u4mr4ee6qofvj32
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/autoconf-2.69-j4a5oxd7x52krlrb6cltlojgfxayltdb
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openssl-1.1.1j-rnzh3om4tyjjsgobwob6tcy62fq775da
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/bison-3.7.4-qfnh2o6mltag5o23xwflrz27ut7owzon
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/automake-1.16.3-24iiwsst3ag43rfhulzcbplwlll7jlqv
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/libevent-2.1.12-wx6szbwgk3vvwacstqhejfawix23diit
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/findutils-4.6.0-352kidjoctyidtu54vel57amnmo57w7n
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/numactl-2.0.14-pmxr6abyahe4mlfazt37qhv2iniiridp
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/flex-2.6.4-7kgqsxhl2c75p65u2vrp3mblzxybhqja
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/openmpi-4.0.5-66bvxkbuwjcyn75pw2byl7dj4gml3czc
==> Installing hdf5-1.10.7-ato3r6nrjw3pstivn4do3k76jeyl2qqo
==> No binary for hdf5-1.10.7-ato3r6nrjw3pstivn4do3k76jeyl2qqo found: installing from source
==> Using cached archive: /fefs/home/r0007/all-test/arm/spack/var/spack/cache/_source-cache/archive/7a/7a1a0a54371275ce2dfc5cd093775bb025c365846512961e7e5ceaecb437ef15.tar.gz
==> Ran patch() for hdf5
==> hdf5: Executing phase: 'autoreconf'
==> hdf5: Executing phase: 'configure'
==> hdf5: Executing phase: 'build'
==> hdf5: Executing phase: 'install'
==> hdf5: Successfully installed hdf5-1.10.7-ato3r6nrjw3pstivn4do3k76jeyl2qqo
Fetch: 0.03s. Build: 1m 41.15s. Total: 1m 41.18s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/hdf5-1.10.7-ato3r6nrjw3pstivn4do3k76jeyl2qqo
==> Installing netcdf-c-4.7.4-pawwoevihji2ddqz7iu7wyjxmf5tx3k7
==> No binary for netcdf-c-4.7.4-pawwoevihji2ddqz7iu7wyjxmf5tx3k7 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/0e/0e476f00aeed95af8771ff2727b7a15b2de353fb7bb3074a0d340b55c2bd4ea8.tar.gz
==> No patches needed for netcdf-c
==> netcdf-c: Executing phase: 'autoreconf'
==> netcdf-c: Executing phase: 'configure'
==> netcdf-c: Executing phase: 'build'
==> netcdf-c: Executing phase: 'install'
==> netcdf-c: Successfully installed netcdf-c-4.7.4-pawwoevihji2ddqz7iu7wyjxmf5tx3k7
Fetch: 2.41s. Build: 40.12s. Total: 42.52s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/netcdf-c-4.7.4-pawwoevihji2ddqz7iu7wyjxmf5tx3k7
==> Installing netcdf-fortran-4.5.3-rqsgzzqo5j27xdmxd66lx6ahdnsdwvtf
==> No binary for netcdf-fortran-4.5.3-rqsgzzqo5j27xdmxd66lx6ahdnsdwvtf found: installing from source
==> Fetching https://postk-web.r-ccs.riken.jp/spack.mirror/_source-cache/archive/12/123a5c6184336891e62cf2936b9f2d1c54e8dee299cfd9d2c1a1eb05dd668a74.tar.gz
==> No patches needed for netcdf-fortran
==> netcdf-fortran: Executing phase: 'autoreconf'
==> netcdf-fortran: Executing phase: 'configure'
==> netcdf-fortran: Executing phase: 'build'
==> netcdf-fortran: Executing phase: 'install'
==> netcdf-fortran: Successfully installed netcdf-fortran-4.5.3-rqsgzzqo5j27xdmxd66lx6ahdnsdwvtf
Fetch: 0.14s. Build: 38.78s. Total: 38.92s.
[+] /fefs/home/r0007/all-test/arm/spack/opt/spack/linux-rhel8-thunderx2/arm-20.1.0.15/netcdf-fortran-4.5.3-rqsgzzqo5j27xdmxd66lx6ahdnsdwvtf
==> Installing amber-18.20-bs4d2rvfi7snmsv3cajgkaupmjk7kz7i
==> No binary for amber-18.20-bs4d2rvfi7snmsv3cajgkaupmjk7kz7i found: installing from source
==> Error: FetchError: Manual download is required for amber. Refer to http://ambermd.org/ for download instructions.

/fefs/home/r0007/all-test/arm/spack/lib/spack/spack/package.py:1360, in do_fetch:
1357
1358 self.stage.create()
1359 err_msg = None if not self.manual_download else self.download_instr
>> 1360 start_time = time.time()
1361 self.stage.fetch(mirror_only, err_msg=err_msg)
1362 self._fetch_time = time.time() - start_time
1363


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