List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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admixtools 7.0.2

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /opt/FJSVxtclanga/tcsds-latest (external fujitsu-ssl2-head-qa7iyj5emttingfmlg3424h3vekiviw3)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
==> Installing gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
==> No binary for gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ef/efbbf3785da0e53038be7907500628b466152dbc3c173a87de1b5eba2e23602b.tar.gz
==> No patches needed for gsl
==> gsl: Executing phase: 'autoreconf'
==> gsl: Executing phase: 'configure'
==> gsl: Executing phase: 'build'
==> gsl: Executing phase: 'install'
==> gsl: Successfully installed gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
Fetch: 1.55s. Build: 51m 38.47s. Total: 51m 40.02s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gsl-2.7-fm4fuduogrkyoqft5vpbzv7ylz5ejlrc
==> Installing admixtools-7.0.2-mjjm7hszxn3xlbbs4ez7kbiwixfycvhg
==> No binary for admixtools-7.0.2-mjjm7hszxn3xlbbs4ez7kbiwixfycvhg found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/d1/d1dc1963e01017f40e05e28009008e14388a14a3facc75cff46653da585bd91e.tar.gz
==> No patches needed for admixtools
==> admixtools: Executing phase: 'edit'
==> admixtools: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

30 errors found in build log:
222 mergeit.c:487:15: warning: passing 'unsigned char *' to parameter o
f type 'char *' converts between pointers to integer types with dif
ferent sign [-Wpointer-sign]
223 clearepath (packg);
224 ^~~~~
225 ./mcio.h:105:23: note: passing argument to parameter 'xpack' here
226 void clearepath(char *xpack) ;
227 ^
>> 228 /usr/bin/ld: cannot find -lopenblas
>> 229 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 230 make: *** [<builtin>: qp3Pop] Error 1
231 make: *** Waiting for unfinished jobs....
232 3 warnings generated.
>> 233 /usr/bin/ld: cannot find -lopenblas
>> 234 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 235 make: *** [<builtin>: qpDstat] Error 1
236 kimf.c:1645:108: warning: format specifies type 'unsigned int' but
the argument has type 'void *' [-Wformat]
237 if (verbose) printf("largeliter: %d xcload xchit: %d %d %x score
: %12.6f\n", largeliter, xcload, xchit, topheap(), lastkimscore) ;
238 ~~
^~~~~~~~~
239 kimf.c:1953:44: warning: more '%' conversions than data arguments [
-Wformat]
240 printf("zz3 %15.9f %12.6f %12.6f %12.6f %12.6f\n", y2, y1, y1
*y2) ;
241 ~~~~~^
242 gslkim.c:120:32: warning: format specifies type 'unsigned int' but
the argument has type 'void *' [-Wformat]
243 printf("zzheap: %x\n", topheap()) ;
244 ~~ ^~~~~~~~~
>> 245 /usr/bin/ld: cannot find -lopenblas
>> 246 /usr/bin/ld: cannot find -lopenblas
247 1 warning generated.
>> 248 /usr/bin/ld: cannot find -lopenblas
>> 249 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 250 make: *** [<builtin>: qpF4ratio] Error 1
>> 251 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 252 make: *** [<builtin>: qpAdm] Error 1
>> 253 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 254 make: *** [<builtin>: qpWave] Error 1
>> 255 /usr/bin/ld: cannot find -lopenblas
>> 256 /usr/bin/ld: cannot find -lopenblas
>> 257 /usr/bin/ld: cannot find -lopenblas
>> 258 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 259 make: *** [<builtin>: qp4diff] Error 1
>> 260 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 261 /usr/bin/ld: cannot find -lopenblas
>> 262 make: *** [<builtin>: qpdslow] Error 1
>> 263 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 264 make: *** [<builtin>: dowtjack] Error 1
>> 265 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 266 make: *** [<builtin>: qpBound] Error 1
267 gcount.c:863:1: warning: control may reach end of non-void function
[-Wreturn-type]
268 }
269 ^
270 gcount.c:893:1: warning: control may reach end of non-void function
[-Wreturn-type]
271 }
272 ^
>> 273 /usr/bin/ld: cannot find -lopenblas
>> 274 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 275 make: *** [<builtin>: qpGraph] Error 1
276 2 warnings generated.
277 2 warnings generated.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-admixtools-7.0.2-mjjm7hszxn3xlbbs4ez7kbiwixfycvhg/spack-build-out.txt


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