List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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biobloom 2.2.0

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
==> Installing boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5
==> No binary for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 found: installing from source
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sparsehash-2.0.4-zexb3mkdkjvgq7tbdkswa7zkzohr3at2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libiconv-1.16-53uyda5tbc4cft2ipchbsft56qsivt74
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
==> Installing tar-1.34-maai44hopmyo3dxdsumtcunbv4mjn3ej
==> No binary for tar-1.34-maai44hopmyo3dxdsumtcunbv4mjn3ej found: installing from source
==> Warning: Skipping build of biobloom-2.2.0-mherct7upihurxr6l5rwap3l7rxgm4bt since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Fetching https://mirror.spack.io/_source-cache/archive/03/03d908cf5768cfe6b7ad588c921c6ed21acabfb2b79b788d1330453507647aed.tar.gz
==> No patches needed for tar
==> tar: Executing phase: 'autoreconf'
==> tar: Executing phase: 'configure'
==> tar: Executing phase: 'build'
==> tar: Executing phase: 'install'
==> tar: Successfully installed tar-1.34-maai44hopmyo3dxdsumtcunbv4mjn3ej
Fetch: 0.70s. Build: 15m 4.66s. Total: 15m 5.36s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/tar-1.34-maai44hopmyo3dxdsumtcunbv4mjn3ej
==> Installing sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k
==> No binary for sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/2f/2f192977b47406ae8992292c7e841ef23d4656bf72f6140540bed53af68e06ed
==> No patches needed for sdsl-lite
==> sdsl-lite: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./install.sh' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k'

4 errors found in build log:
2619 -- Build files have been written to: /vol0003/rccs-sdt/a01008/spac
k-stage/spack-stage-sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt
3k/spack-src/sdsl-lite-2.1.1/build
2620 [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o
2621 [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algo
rithm.cpp.o
2622 In file included from /vol0003/rccs-sdt/a01008/spack-stage/spack-s
tage-sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k/spack-src/sd
sl-lite-2.1.1/lib/bp_support_algorithm.cpp:1:
2623 In file included from /vol0003/rccs-sdt/a01008/spack-stage/spack-s
tage-sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k/spack-src/sd
sl-lite-2.1.1/build/lib/../include/sdsl/bp_support_algorithm.hpp:2
4:
2624 In file included from /vol0003/rccs-sdt/a01008/spack-stage/spack-s
tage-sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k/spack-src/sd
sl-lite-2.1.1/build/lib/../include/sdsl/int_vector.hpp:26:
>> 2625 /vol0003/rccs-sdt/a01008/spack-stage/spack-stage-sdsl-lite-2.1.1-6
43qlkr4nevcubo4whd74hevganzqt3k/spack-src/sdsl-lite-2.1.1/build/li
b/../include/sdsl/util.hpp:58:10: fatal error: 'process.h' file no
t found
2626 #include <process.h>
2627 ^~~~~~~~~~~
2628 1 error generated.
>> 2629 make[3]: *** [lib/CMakeFiles/sdsl.dir/build.make:90: lib/CMakeFile
s/sdsl.dir/bp_support_algorithm.cpp.o] Error 1
>> 2630 make[2]: *** [CMakeFiles/Makefile2:713: lib/CMakeFiles/sdsl.dir/al
l] Error 2
>> 2631 make[1]: *** [CMakeFiles/Makefile2:720: lib/CMakeFiles/sdsl.dir/ru
le] Error 2
2632 make: *** [Makefile:293: sdsl] Error 2
2633 ERROR: Build failed.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-sdsl-lite-2.1.1-643qlkr4nevcubo4whd74hevganzqt3k/spack-build-out.txt

==> Error: biobloom-2.2.0-mherct7upihurxr6l5rwap3l7rxgm4bt: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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