List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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bohrium 0.9.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external libxml2-2.9.7-sjfhie7egvrddyaxgsplnop3zfbkkssb)
[+] /vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj (external python-3.9.9-3wcip6atrybofsb566d7pjqwhl76u4dp)
[+] /usr (external automake-1.16.1-gbketv7wv244mk5mkf65hyjxew4yocxo)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external pcre-8.42-ubt55iodsyy4jsmwgjpm7otqpdrrpgt2)
[+] /usr (external pkgconf-1.4.2-x2r3t6jrikcoqgyvulfa2xm3cgearc2z)
==> Installing boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5
==> No binary for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 found: installing from source
1 out of 1 hunk FAILED -- saving rejects to file tools/build/src/tools/clang-linux.jam.rej
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/fc/fc9f85fc030e233142908241af7a846e60630aa7388de9a5fafb1f3a26840854.tar.bz2
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/93/93f4aad8f88d1437e50d95a2d066390ef3753b99ef5de24f7a46bc083bd6df06
==> Patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis.patch' '-d' '.'
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cuda-11.5.0-mz3tth6baxhidipkfoqini2wcriyefw5
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/swig-4.0.2-fscqhexdv3m4dy7xycwmjs3nibvrsows
==> Installing opencv-4.5.2-f2g2hf6qclh5gbepcouosxovnblvzws7
==> No binary for opencv-4.5.2-f2g2hf6qclh5gbepcouosxovnblvzws7 found: installing from source
==> Warning: Skipping build of bohrium-0.9.1-7xemvyfxwtskzfgejkav2lb27rvp3ozl since boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/ae/ae258ed50aa039279c3d36afdea5c6ecf762515836b27871a8957c610d0424f8.tar.gz
==> No patches needed for opencv
==> opencv: Executing phase: 'cmake'
==> opencv: Executing phase: 'build'
==> opencv: Executing phase: 'install'
==> opencv: Successfully installed opencv-4.5.2-f2g2hf6qclh5gbepcouosxovnblvzws7
Fetch: 0.93s. Build: 10m 58.98s. Total: 10m 59.91s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/opencv-4.5.2-f2g2hf6qclh5gbepcouosxovnblvzws7
==> Installing netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax
==> No binary for netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/d0/d0085d2caf997ff39299c05d4bacb6f3d27001d25a4cc613d48c1f352b73e7e0.tar.gz
==> Ran patch() for netlib-lapack
==> netlib-lapack: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF' '-DCMAKE_INSTALL_RPATH:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax/lib;/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax/lib64' '-DCMAKE_PREFIX_PATH:STRING=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz' '-DBUILD_SHARED_LIBS:BOOL=OFF' '-DLAPACKE:BOOL=ON' '-DLAPACKE_WITH_TMG:BOOL=ON' '-DCBLAS=ON' '-DBUILD_DEPRECATED:BOOL=ON' '-DBUILD_TESTING:BOOL=OFF' '/home/rccs-sdt/a01008/spack-stage/spack-stage-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax/spack-src'

6 errors found in build log:
43 No FortranCInterface mangling known for VerifyFortran
44 Call Stack (most recent call first):
45 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/sp
ack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u
7qtoosnkz/share/cmake-3.21/Modules/FortranCInterface/Verify/CMakeLi
sts.txt:17 (FortranCInterface_HEADER)
46 This warning is for project developers. Use -Wno-dev to suppress i
t.
47
48 -- Verifying Fortran/C Compiler Compatibility - Failed
>> 49 CMake Error at /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225
/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4
szlnkzjz3u57u7qtoosnkz/share/cmake-3.21/Modules/FortranCInterface.c
make:391 (message):
50 The Fortran compiler:
51
52 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/
spack/env/fj/frt
53
54 and the C compiler:
55

...

94 [ 80%] Building C object CMakeFiles/VerifyFortranC.dir/VerifyC.
c.o
95 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/
spack/env/fj/fcc -I/vol0003/rccs-sdt/a01008/spack-stage/spack-stag
e-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax/spack-src/sp
ack-build-static/CMakeFiles/FortranCInterface/VerifyC -O3 -DNDEBUG
-MD -MT CMakeFiles/VerifyFortranC.dir/VerifyC.c.o -MF CMakeFiles/Ve
rifyFortranC.dir/VerifyC.c.o.d -o CMakeFiles/VerifyFortranC.dir/Ver
ifyC.c.o -c /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/sp
ack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szl
nkzjz3u57u7qtoosnkz/share/cmake-3.21/Modules/FortranCInterface/Veri
fy/VerifyC.c
96 [100%] Linking C executable VerifyFortranC
97 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/
spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u5
7u7qtoosnkz/bin/cmake -E cmake_link_script CMakeFiles/VerifyFortran
C.dir/link.txt --verbose=1
98 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/
spack/env/fj/fcc -O3 -DNDEBUG --linkfortran CMakeFiles/VerifyFortra
nC.dir/main.c.o CMakeFiles/VerifyFortranC.dir/VerifyC.c.o -o Verify
FortranC libVerifyFortran.a -lfj90i -lfj90fmt_sve -lfj90f -lfjsrci
nfo
99 CMakeFiles/VerifyFortranC.dir/main.c.o: In function `main':
>> 100 /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spac
k/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7q
toosnkz/share/cmake-3.21/Modules/FortranCInterface/Verify/main.c:14
: undefined reference to `VerifyFortran'
>> 101 clang-7: error: linker command failed with exit code 1 (use -v
to see invocation)
>> 102 gmake[3]: *** [CMakeFiles/VerifyFortranC.dir/build.make:117: Ve
rifyFortranC] Error 1
103 gmake[3]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-sta
ge/spack-stage-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax
/spack-src/spack-build-static/CMakeFiles/FortranCInterface/VerifyC'
>> 104 gmake[2]: *** [CMakeFiles/Makefile2:114: CMakeFiles/VerifyFortr
anC.dir/all] Error 2
105 gmake[2]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-sta
ge/spack-stage-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax
/spack-src/spack-build-static/CMakeFiles/FortranCInterface/VerifyC'
>> 106 gmake[1]: *** [CMakeFiles/Makefile2:121: CMakeFiles/VerifyFortr
anC.dir/rule] Error 2
107 gmake[1]: Leaving directory '/vol0003/rccs-sdt/a01008/spack-sta
ge/spack-stage-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax
/spack-src/spack-build-static/CMakeFiles/FortranCInterface/VerifyC'
108 gmake: *** [Makefile:140: VerifyFortranC] Error 2
109
110
111 Call Stack (most recent call first):
112 CBLAS/CMakeLists.txt:9 (FortranCInterface_VERIFY)

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax/spack-build-out.txt

==> Warning: Skipping build of py-numpy-1.21.3-bxrl3md3hnl4rcplltg37tqzqisokgcl since netlib-lapack-3.9.1-doaxmgu47etukkmk3qqo43e3j3qbs2ax failed
==> Error: bohrium-0.9.1-7xemvyfxwtskzfgejkav2lb27rvp3ozl: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs


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