Failed Reason

Failed to install dependency package :
------------------------------------------------
==> perl-scalar-list-utils: Executing phase: 'install'
==> perl-scalar-list-utils: Successfully installed perl-scalar-list-utils-1.50-bemw27nqupa37bldgkdp4cta45zhjnkg
Fetch: 0.77s. Build: 10.46s. Total: 11.24s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-scalar-list-utils-1.50-bemw27nqupa37bldgkdp4cta45zhjnkg
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-class-data-inheritable-0.08-l4zqfgbqygoeksbiv2kdtr3q3sfhktcp
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-module-build-0.4224-rffcqbqsimvmylgezexantsbf7l5ksta
==> Installing perl-clone-choose-0.010-pz7i7z3majsxknrvcpnzavedoqrabgib
==> No binary for perl-clone-choose-0.010-pz7i7z3majsxknrvcpnzavedoqrabgib found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/56/5623481f58cee8edb96cd202aad0df5622d427e5f748b253851dfd62e5123632.tar.gz
==> No patches needed for perl-clone-choose
==> perl-clone-choose: Executing phase: 'configure'
==> perl-clone-choose: Executing phase: 'build'
==> perl-clone-choose: Executing phase: 'install'
==> perl-clone-choose: Successfully installed perl-clone-choose-0.010-pz7i7z3majsxknrvcpnzavedoqrabgib
Fetch: 0.62s. Build: 6.13s. Total: 6.75s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-clone-choose-0.010-pz7i7z3majsxknrvcpnzavedoqrabgib
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-58.2.0-nwtt7d5cczfaezzecmrcr4swo63tvrg2
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/qhull-2020.2-rhjxlmj2sdddem4fxhtncdolfwzy6stl
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/bamtools-2.5.1-e3khxbqz3c4po2qlo3hooehffiywlmfq
==> Installing diamond-2.0.11-bxxukmydv7gcc3r5wfatqbfik7jicwvn
==> No binary for diamond-2.0.11-bxxukmydv7gcc3r5wfatqbfik7jicwvn found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/41/41f3197aaafff9c42763fb7658b67f730ebc6dd3c0533c9c3d54bd3166e93f24.tar.gz
==> No patches needed for diamond
==> diamond: Executing phase: 'cmake'
==> diamond: Executing phase: 'build'
==> diamond: Executing phase: 'install'
==> diamond: Successfully installed diamond-2.0.11-bxxukmydv7gcc3r5wfatqbfik7jicwvn
Fetch: 1.22s. Build: 5m 38.37s. Total: 5m 39.59s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/diamond-2.0.11-bxxukmydv7gcc3r5wfatqbfik7jicwvn
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/libjpeg-turbo-2.1.0-uocr25meow4yzjybzchavleirgndwx4i
==> Installing samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5
==> No binary for samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/6d/6da3770563b1c545ca8bdf78cf535e6d1753d6383983c7929245d5dba2902dcb.tar.bz2
==> No patches needed for samtools
==> samtools: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'./configure' '--prefix=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5' '--with-htslib=/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/htslib-1.12-c5u36oarkl4rtix2agehpbjov64mwmhk' '--with-ncurses' 'CURSES_LIB=-lncursesw -ltinfow'

2 errors found in build log:
14 checking for C compiler warning flags... -Wall
15 checking for special C compiler options needed for large files... no
16 checking for _FILE_OFFSET_BITS value needed for large files... no
17 checking for htslib/sam.h... yes
18 checking for hts_version in -lhts... yes
19 checking for Curses library... no
>> 20 configure: error: curses development files not found
21
22 The 'samtools tview' command uses the curses text user interface lib
rary.
23 Building samtools with tview requires curses/ncurses/etc development
files
24 to be installed on the build machine; you may need to ensure a packa
ge such
25 as libncurses5-dev (on Debian or Ubuntu Linux) or ncurses-devel (on
RPM-based
26 Linux distributions) is installed.
27
>> 28 FAILED. Either configure --without-curses or resolve this error to
build
29 samtools successfully.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5/spack-build-out.txt

==> Installing perl-file-homedir-1.004-4hv4n7s5ffg7ikkjfpmm37fvcnffbty3
==> No binary for perl-file-homedir-1.004-4hv4n7s5ffg7ikkjfpmm37fvcnffbty3 found: installing from source
==> Warning: Skipping build of augustus-3.3.2-2tj6uq5y45jv2mqb2wcwzthz5nzceowg since samtools-1.12-y54nozxqwkvrpw55euukosgh7bgq7fo5 failed
==> Warning: Skipping build of braker-2.1.6-yc7h2qbx33gj6sacmzla5zckl3jo3tio since augustus-3.3.2-2tj6uq5y45jv2mqb2wcwzthz5nzceowg failed
==> Fetching https://mirror.spack.io/_source-cache/archive/45/45f67e2bb5e60a7970d080e8f02079732e5a8dfc0c7c3cbdb29abfb3f9f791ad.tar.gz
==> No patches needed for perl-file-homedir
==> perl-file-homedir: Executing phase: 'configure'
==> perl-file-homedir: Executing phase: 'build'
==> perl-file-homedir: Executing phase: 'install'
==> perl-file-homedir: Successfully installed perl-file-homedir-1.004-4hv4n7s5ffg7ikkjfpmm37fvcnffbty3
Fetch: 0.65s. Build: 6.69s. Total: 7.34s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-file-homedir-1.004-4hv4n7s5ffg7ikkjfpmm37fvcnffbty3
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-exception-class-1.43-xv6vbgjdpahgo2yt2wjhfl2uhmlwb5vd
==> Installing perl-hash-merge-0.300-r7tepfhkyweak6utrndyto7eyiyd5in5
==> No binary for perl-hash-merge-0.300-r7tepfhkyweak6utrndyto7eyiyd5in5 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/40/402fd52191d51415bb7163b7673fb4a108e3156493d7df931b8db4b2af757c40.tar.gz
==> No patches needed for perl-hash-merge
==> perl-hash-merge: Executing phase: 'configure'
==> perl-hash-merge: Executing phase: 'build'
==> perl-hash-merge: Executing phase: 'install'
==> perl-hash-merge: Successfully installed perl-hash-merge-0.300-r7tepfhkyweak6utrndyto7eyiyd5in5
Fetch: 0.65s. Build: 5.11s. Total: 5.76s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-hash-merge-0.300-r7tepfhkyweak6utrndyto7eyiyd5in5
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pyparsing-2.4.7-svkdl2gu6r74fpeovo2dzkur2gjc52i7
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cython-0.29.24-rmuycsh3hdsfbp3ffdahdadzgeju5kfs
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cppy-1.1.0-linzg2uz35ut7khvcm63bayt5nbqlr2e
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pip-21.1.2-lraxbrobmv3m3awsrfqfvxwklwpu52rf
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-six-1.16.0-7wy35e2zjrxyks3it4qdao6wlgugjsjj
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-certifi-2021.10.8-unokuqtcoh3uja5zbsqodlngvhkafqpu
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-pillow-8.0.0-inksfdgdd6trpv2cilc2spyeneedxzt7
==> Installing perl-object-insideout-4.05-dorbyqq6hdyntprehmb75ura3yf2u2dg
==> No binary for perl-object-insideout-4.05-dorbyqq6hdyntprehmb75ura3yf2u2dg found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9dfd6ca2822724347e0eb6759d00709425814703ad5c66bdb6214579868bcac4.tar.gz
==> No patches needed for perl-object-insideout
==> perl-object-insideout: Executing phase: 'configure'
==> perl-object-insideout: Executing phase: 'build'
==> perl-object-insideout: Executing phase: 'install'
==> perl-object-insideout: Successfully installed perl-object-insideout-4.05-dorbyqq6hdyntprehmb75ura3yf2u2dg
Fetch: 0.82s. Build: 11.33s. Total: 12.15s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-object-insideout-4.05-dorbyqq6hdyntprehmb75ura3yf2u2dg
==> Installing genemark-et-4.65-hniiq7w5b7jclaoswabvz6l7ylxxwz3r
==> No binary for genemark-et-4.65-hniiq7w5b7jclaoswabvz6l7ylxxwz3r found: installing from source
==> Error: FetchError: Manual download is required for genemark-et. Refer to http://topaz.gatech.edu/GeneMark for download instructions.

/vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/lib/spack/spack/package.py:1387, in do_fetch:
1384
1385 self.stage.create()
1386 err_msg = None if not self.manual_download else self.download_instr
>> 1387 start_time = time.time()
1388 self.stage.fetch(mirror_only, err_msg=err_msg)
1389 self._fetch_time = time.time() - start_time
1390

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-packaging-21.0-s6cid7alqa7tw3xxefl7ekdcot2fjcgn
==> Installing py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh
==> No binary for py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/63/63571bb7897a584ca3249c86dd01c10bcb5fe4296e3568b2e9c1a55356b6410e.zip
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/a01008/opt/python/3.9.9/fj/bin/python3.9' '-s' 'setup.py' '--no-user-cfg' 'build'
See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh/spack-build-out.txt

[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-kiwisolver-1.3.2-ewoonffipal5ap3mcwl4lzxgajk66pvy
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-tomli-1.2.1-qxysj56clo6kspouoq4msjtem3n3lijr
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-cycler-0.10.0-iyssuq4lbtydqiwmax5gft7kl54vbthx
==> Installing perl-logger-simple-2.0-kda5aixsbqrnmcmuhm2tirfmbg3rsbrf
==> No binary for perl-logger-simple-2.0-kda5aixsbqrnmcmuhm2tirfmbg3rsbrf found: installing from source
==> Warning: Skipping build of py-matplotlib-3.4.3-5e2genfoboyc3seq62qdeapry6wbkksr since py-numpy-1.21.3-eopspnavmocj2cziofoszo4vonyhfseh failed
==> Warning: Skipping build of bcftools-1.12-uw6ozt5oqlop3oovmrukn6tlqunaf7vg since py-matplotlib-3.4.3-5e2genfoboyc3seq62qdeapry6wbkksr failed
==> Fetching https://mirror.spack.io/_source-cache/archive/2e/2e63fd3508775b5902132ba1bfb03b42bee468dfaf35dfe42e1909ff6d291b2d.tar.gz
==> No patches needed for perl-logger-simple
==> perl-logger-simple: Executing phase: 'configure'
==> perl-logger-simple: Executing phase: 'build'
==> perl-logger-simple: Executing phase: 'install'
==> perl-logger-simple: Successfully installed perl-logger-simple-2.0-kda5aixsbqrnmcmuhm2tirfmbg3rsbrf
Fetch: 0.64s. Build: 4.68s. Total: 5.33s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/perl-logger-simple-2.0-kda5aixsbqrnmcmuhm2tirfmbg3rsbrf
==> Warning: boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5 failed to install
==> Warning: AssertionError exception when releasing read lock for boost-1.77.0-tfuifjz2phadvkgys7c237zb3uj4noi5:
==> Error: braker-2.1.6-yc7h2qbx33gj6sacmzla5zckl3jo3tio: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-setuptools-scm-6.3.2-eobdhwxld3ay3ywvassepocvioqlmoyt
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/py-python-dateutil-2.8.2-47xpbgpsge4zr2jarbvsyc5uofvh3srv