List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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denovogear 1.1.1

Compiler Fujitsu Compiler 4.7.0
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /usr (external bzip2-1.0.6-pkyqs6czmr636ktska3fpjek77reodry)
[+] /usr (external zlib-1.2.11-o3hvygtdcp6vg3bpvsrurq4hgklwtype)
[+] /usr (external ncurses-6.1-qbvus6vwvtyxe33hxq4hbpazkrpy6ctb)
[+] /usr (external curl-7.61.1-s5ho6wv4jx7d2f2vj27fvdaok5ajslfc)
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/gnuconfig-2021-08-14-ezyvb3gy7i726n45kwb44a4vxle3if3i
[+] /usr (external xz-5.2.4-ur7otl6tq7yv3vijsn6wu2nnvot443ku)
==> Installing boost-1.60.0-fjmx645awldy5rlf63p4b4nxmtmrnd6x
==> No binary for boost-1.60.0-fjmx645awldy5rlf63p4b4nxmtmrnd6x found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/68/686affff989ac2488f79a97b9479efb9f2abae035b5ed4d8226de6857933fd3b.tar.bz2
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/clang-linux_add_option.patch
==> Applied patch /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/repos/builtin/packages/boost/boost_154.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> boost: Successfully installed boost-1.60.0-fjmx645awldy5rlf63p4b4nxmtmrnd6x
Fetch: 3.81s. Build: 48m 21.26s. Total: 48m 25.07s.
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/boost-1.60.0-fjmx645awldy5rlf63p4b4nxmtmrnd6x
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/cmake-3.21.4-vgsk3aw6j4szlnkzjz3u57u7qtoosnkz
==> Installing htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm
==> No binary for htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/var/spack/cache/_source-cache/archive/f2/f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
69 config.status: linking /home/rccs-sdt/a01008/spack-stage/spack-stage
-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-src/htslib.mk to
htslib.mk
70 config.status: executing mkdir commands
71 ==> htslib: Executing phase: 'build'
72 ==> [2022-02-28-17:00:53.402805] 'make' '-j16' 'V=1'
73 make: Makefile: Too many levels of symbolic links
74 make: stat: Makefile: Too many levels of symbolic links
>> 75 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/home/rccs-sdt/a01008/spack-stage/spack-stage-htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm/spack-build-out.txt

==> Warning: Skipping build of denovogear-1.1.1-bfh24w7cfexzlixrbc3kfllbrtuhifnp since htslib-1.13-fhtjfrpfxso4cg63dmqktjajuysqtgqm failed
==> Error: denovogear-1.1.1-bfh24w7cfexzlixrbc3kfllbrtuhifnp: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/a01008/spack-all-test/env-20220225/spack/opt/spack/linux-rhel8-a64fx/fj-4.7.0/eigen-3.4.0-e7wcgbdlufc4qo4cfhowtlgol2vweytr


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